RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 NLRP14Q86W24 1093 aa23.51■■□□□ 1.35
USP48-205ENST00000421625 SPATS2Q86XZ4 545 aaKnown RBP23.51■■□□□ 1.35
USP48-205ENST00000421625 MYCBPAPQ8TBZ2 947 aa23.51■■□□□ 1.35
USP48-205ENST00000421625 DCP1AQ9NPI6 582 aaPredicted RBP23.51■■□□□ 1.35
USP48-205ENST00000421625 CD248Q9HCU0 757 aa23.5■■□□□ 1.35
USP48-205ENST00000421625 PACSIN2Q9UNF0 486 aaPredicted RBP23.5■■□□□ 1.35
USP48-205ENST00000421625 TDRD12Q587J7 1177 aaKnown RBP23.5■■□□□ 1.35
USP48-205ENST00000421625 CNNM4Q6P4Q7 775 aa23.5■■□□□ 1.35
USP48-205ENST00000421625 PDXDC1Q6P996 788 aa23.5■■□□□ 1.35
USP48-205ENST00000421625 ATP6V1G3Q96LB4 118 aa23.5■■□□□ 1.35
USP48-205ENST00000421625 PAGR1Q9BTK6 254 aa23.5■■□□□ 1.35
USP48-205ENST00000421625 MAGEF1Q9HAY2 307 aa23.5■■□□□ 1.35
USP48-205ENST00000421625 COL16A1Q07092 1604 aaPredicted RBP23.5■■□□□ 1.35
USP48-205ENST00000421625 RREB1Q92766 1687 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 PALMO75781 387 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 MDH1P40925 334 aaKnown RBP23.49■■□□□ 1.35
USP48-205ENST00000421625 MAN2A1Q16706 1144 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 HGSNATQ68CP4 663 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 PRPHP41219 470 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 MICALCLQ6ZW33 695 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 CD302Q8IX05 232 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 MREGQ8N565 214 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 LTBP4Q8N2S1 1624 aa23.49■■□□□ 1.35
USP48-205ENST00000421625 OR52Z1P0C646 297 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 TECP42680 631 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 SETQ01105 290 aaPredicted RBP23.48■■□□□ 1.35
USP48-205ENST00000421625 IFT88Q13099 833 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 MAATS1Q7Z4T9 603 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 TEX2Q8IWB9 1127 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 PNMA1Q8ND90 353 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 NLRC4Q9NPP4 1024 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 ITGB4P16144 1822 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 HPDP32754 393 aaPredicted RBP23.48■■□□□ 1.35
USP48-205ENST00000421625 IL6STP40189 918 aaPredicted RBP23.48■■□□□ 1.35
USP48-205ENST00000421625 ITGB3BPQ13352 177 aaPredicted RBP23.48■■□□□ 1.35
USP48-205ENST00000421625 LETM2Q2VYF4 491 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 EMC10Q5UCC4 262 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 CACNA2D4Q7Z3S7 1137 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 YTHDF3Q7Z739 585 aaKnown RBP23.48■■□□□ 1.35
USP48-205ENST00000421625 MMTAG2Q9BU76 263 aaKnown RBP23.48■■□□□ 1.35
USP48-205ENST00000421625 PLAAQ9Y263 795 aa23.48■■□□□ 1.35
USP48-205ENST00000421625 COL14A1Q05707 1796 aaKnown RBP23.47■■□□□ 1.35
USP48-205ENST00000421625 E7EVH7 732 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 LAD1O00515 517 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 CYTH3O43739 400 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 CEP85LQ5SZL2 805 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 CCDC84Q86UT8 332 aaPredicted RBP23.47■■□□□ 1.35
USP48-205ENST00000421625 STXBP3O00186 592 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 CCNT1O60563 726 aaKnown RBP23.47■■□□□ 1.35
USP48-205ENST00000421625 DDB1Q16531 1140 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 RNF10Q8N5U6 811 aaKnown RBP23.47■■□□□ 1.35
USP48-205ENST00000421625 IL17RBQ9NRM6 502 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 TSKSQ9UJT2 592 aa23.47■■□□□ 1.35
USP48-205ENST00000421625 PPP1R2P41236 205 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 DDR1Q08345 913 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 AK8Q96MA6 479 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 CENPHQ9H3R5 247 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 VCPKMTQ9H867 229 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 MAD2L2Q9UI95 211 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 AHDC1Q5TGY3 1603 aaPredicted RBP23.46■■□□□ 1.35
USP48-205ENST00000421625 CASZ1Q86V15 1759 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 RAD51CO43502 376 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 DYMQ7RTS9 669 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 CCDC13Q8IYE1 715 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 PPANQ9NQ55 473 aaKnown RBP23.46■■□□□ 1.35
USP48-205ENST00000421625 BCL9O00512 1426 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 ACTN3Q08043 901 aaPredicted RBP23.46■■□□□ 1.35
USP48-205ENST00000421625 DAGLBQ8NCG7 672 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 NSUN4Q96CB9 384 aaKnown RBP23.46■■□□□ 1.35
USP48-205ENST00000421625 RNF14Q9UBS8 474 aa23.46■■□□□ 1.35
USP48-205ENST00000421625 TLR2O60603 784 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 TFAP4Q01664 338 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 MECOMQ03112 1051 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 KCNMA1Q12791 1236 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 KCTD19Q17RG1 926 aaPredicted RBP23.45■■□□□ 1.34
USP48-205ENST00000421625 KLHL7Q8IXQ5 586 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 TANGO6Q9C0B7 1094 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 SPATA31A1Q5TZJ5 1347 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 SSU72P8A0A1W2PR75 194 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 MYMKA6NI61 221 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 HMGB1P1B2RPK0 211 aaPredicted RBP23.45■■□□□ 1.34
USP48-205ENST00000421625 FAM107AO95990 144 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 KLRC1P26715 233 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 ATP6V1AP38606 617 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 AMPD3Q01432 767 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 EHHADHQ08426 723 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 COBLL1Q53SF7 1204 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 GLIS3Q8NEA6 775 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 INPP4AQ96PE3 977 aaPredicted RBP23.45■■□□□ 1.34
USP48-205ENST00000421625 CPVLQ9H3G5 476 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 BARHL2Q9NY43 387 aa23.45■■□□□ 1.34
USP48-205ENST00000421625 OR2W6PQ8NHA6 318 aa23.44■■□□□ 1.34
USP48-205ENST00000421625 WHAMMQ8TF30 809 aa23.44■■□□□ 1.34
USP48-205ENST00000421625 ZKSCAN4Q969J2 545 aaPredicted RBP23.44■■□□□ 1.34
USP48-205ENST00000421625 CRNKL1Q9BZJ0 848 aaKnown RBP23.44■■□□□ 1.34
USP48-205ENST00000421625 CDC37Q16543 378 aaPredicted RBP23.44■■□□□ 1.34
USP48-205ENST00000421625 LRRC55Q6ZSA7 311 aa23.44■■□□□ 1.34
USP48-205ENST00000421625 RBAK-RBAKDNI3L0D1 243 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 USP17L8P0C7I0 530 aa23.43■■□□□ 1.34
USP48-205ENST00000421625 GRM4Q14833 912 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms