RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 VAMP4O75379 141 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 LSSP48449 732 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 PCBP4P57723 403 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 ACAP2Q15057 778 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 STYK1Q6J9G0 422 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 ANKLE2Q86XL3 938 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 SGCZQ96LD1 299 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 TPX2Q9ULW0 747 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 INVSQ9Y283 1065 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 ZKSCAN5Q9Y2L8 839 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 CDK13Q14004 1512 aaKnown RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 PREX2Q70Z35 1606 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 DLGAP3O95886 979 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 CYP11A1P05108 521 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ZKSCAN1P17029 563 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 CTBSQ01459 385 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 MAP4K2Q12851 820 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 CCDC93Q567U6 631 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ELMSAN1Q6PJG2 1045 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 RICTORQ6R327 1708 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 SYDE1Q6ZW31 735 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 SLC41A1Q8IVJ1 513 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ARHGEF39Q8N4T4 335 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 PPHLN1Q8NEY8 458 aaKnown RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 PPP1R35Q8TAP8 253 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 TGFBRAP1Q8WUH2 860 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 CCDC74BQ96LY2 380 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 CARD10Q9BWT7 1032 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 JADE2Q9NQC1 790 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 PRDM6Q9NQX0 595 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 TOPORSQ9NS56 1045 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 KRT82Q9NSB4 513 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 C11orf95C9JLR9 678 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 EPB41L2O43491 1005 aaKnown RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 HSP90AA1P07900 732 aaKnown RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 KPNA1P52294 538 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ZNF445P59923 1031 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ELF2Q15723 593 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ZC3H7AQ8IWR0 971 aaKnown RBP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS13A-207ENST00000419472 SLC5A5Q92911 643 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 TBCBQ99426 244 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 NKX2-4Q9H2Z4 354 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 C1orf112Q9NSG2 853 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 HDAC9Q9UKV0 1011 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 POLHQ9Y253 713 aa6.17□□□□□ -1.42
VPS13A-207ENST00000419472 MAGI2Q86UL8 1455 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 RRM1P23921 792 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CHKAP35790 457 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CABP4P57796 275 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CREB3L3Q68CJ9 461 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 MAATS1Q7Z4T9 603 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 RCC1LQ96I51 464 aaKnown RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 NUP88Q99567 741 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 GTPBP4Q9BZE4 634 aaKnown RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 PICK1Q9NRD5 415 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 MRFAP1Q9Y605 127 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 FRMPD1Q5SYB0 1578 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 PLCH2O75038 1416 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 MAP3K1Q13233 1512 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 PTPDC1A2A3K4 754 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 SOBPA7XYQ1 873 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 MSCO60682 206 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CFBP00751 764 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CKMP06732 381 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 HSPA6P17066 643 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 IREB2P48200 963 aaKnown RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 AUHQ13825 339 aaKnown RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 PUM3Q15397 648 aaKnown RBP6.16□□□□□ -1.42
VPS13A-207ENST00000419472 DPY19L1Q2PZI1 675 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 ZBTB37Q5TC79 503 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 JAKMIP3Q5VZ66 844 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 POMZP3Q6PJE2 187 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CCDC149Q6ZUS6 474 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 KIF18BQ86Y91 864 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CNPY4Q8N129 248 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 CENPOQ9BU64 300 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 WDR18Q9BV38 432 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 PDLIM7Q9NR12 457 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 SLC6A14Q9UN76 642 aa6.16□□□□□ -1.42
VPS13A-207ENST00000419472 EHBP1L1Q8N3D4 1523 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 ARHGEF40Q8TER5 1519 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 LINC01387J3KSC0 135 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 TGM5O43548 720 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 ULK1O75385 1050 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 YBX3P16989 372 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS13A-207ENST00000419472 TM4SF4P48230 202 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 SNW1Q13573 536 aaKnown RBP6.15□□□□□ -1.42
VPS13A-207ENST00000419472 LBRQ14739 615 aaKnown RBP6.15□□□□□ -1.42
VPS13A-207ENST00000419472 KIF4BQ2VIQ3 1234 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 TMEM177Q53S58 311 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 OVCH2Q7RTZ1 564 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 C11orf74Q86VG3 221 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 COL23A1Q86Y22 540 aaPredicted RBP6.15□□□□□ -1.42
VPS13A-207ENST00000419472 MRPL41Q8IXM3 137 aaKnown RBP6.15□□□□□ -1.42
VPS13A-207ENST00000419472 SMARCC1Q92922 1105 aaPredicted RBP6.15□□□□□ -1.42
VPS13A-207ENST00000419472 CCDC138Q96M89 665 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 USP26Q9BXU7 913 aa6.15□□□□□ -1.42
VPS13A-207ENST00000419472 CDC23Q9UJX2 597 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms