RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 KCNH4Q9UQ05 1017 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 VPS9D1Q9Y2B5 631 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 KDM3AQ9Y4C1 1321 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 POTECB2RU33 542 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 VWA5AO00534 786 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 WNT7AO00755 349 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 TDP2O95551 362 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF76P36508 570 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 NDUFA8P51970 172 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 ARHGAP4P98171 946 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 SNAPC2Q13487 334 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 MFSD10Q14728 455 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 STX1AQ16623 288 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 PPP4R3AQ6IN85 833 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L6PQ6QN14 398 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 SHC4Q6S5L8 630 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 SASS6Q6UVJ0 657 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 FASTKD5Q7L8L6 764 aaKnown RBP6.74□□□□□ -1.33
HMGB3-202ENST00000419110 CEP57L1Q8IYX8 460 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 FMR1NBQ8N0W7 255 aaPredicted RBP6.74□□□□□ -1.33
HMGB3-202ENST00000419110 CPXCR1Q8N123 301 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 C2orf69Q8N8R5 385 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF526Q8TF50 670 aaPredicted RBP6.74□□□□□ -1.33
HMGB3-202ENST00000419110 SYMPKQ92797 1274 aaKnown RBP6.74□□□□□ -1.33
HMGB3-202ENST00000419110 KCTD12Q96CX2 325 aaKnown RBP6.74□□□□□ -1.33
HMGB3-202ENST00000419110 WNK4Q96J92 1243 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 CDK5RAP3Q96JB5 506 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 AK8Q96MA6 479 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 TIGD1Q96MW7 591 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 CLIC6Q96NY7 704 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 CSRNP2Q9H175 543 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 ACAD9Q9H845 621 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 MAGEF1Q9HAY2 307 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 RAVER2Q9HCJ3 691 aaKnown RBP6.74□□□□□ -1.33
HMGB3-202ENST00000419110 NMRK2Q9NPI5 230 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 HOMER2Q9NSB8 354 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 CCDC39Q9UFE4 941 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 TCEAL9Q9UHQ7 104 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 KCNH3Q9ULD8 1083 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 AGTPBP1Q9UPW5 1226 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 HPSEQ9Y251 543 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 THSD7BQ9C0I4 1608 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 PFASO15067 1338 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF536O15090 1300 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 FRMPD4Q14CM0 1322 aa6.74□□□□□ -1.33
HMGB3-202ENST00000419110 ZSWIM8A7E2V4 1837 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 UTRNP46939 3433 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 TRAF5O00463 557 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 NFIBO00712 420 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 MEIS2O14770 477 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 OPLAHO14841 1288 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 IRF6O14896 467 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 ATP2A1O14983 1001 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 ADAMTS3O15072 1205 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 SLC26A4O43511 780 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 SLC37A4O43826 429 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 CELF2O95319 508 aaKnown RBP6.73□□□□□ -1.33
HMGB3-202ENST00000419110 OSBPP22059 807 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 HOXA13P31271 388 aaPredicted RBP6.73□□□□□ -1.33
HMGB3-202ENST00000419110 UBA7P41226 1012 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 STAT6P42226 847 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 HSD17B4P51659 736 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 USP11P51784 963 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 GHRHRQ02643 423 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 PLS1Q14651 629 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 COG2Q14746 738 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 TREML2Q5T2D2 321 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 HAUS3Q68CZ6 603 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 KANK3Q6NY19 840 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 NSMFQ6X4W1 530 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 SLC30A10Q6XR72 485 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 CATSPERGQ6ZRH7 1159 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 RBM43Q6ZSC3 357 aaKnown RBP6.73□□□□□ -1.33
HMGB3-202ENST00000419110 FCHSD1Q86WN1 690 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 SLFN12Q8IYM2 578 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 CNNM3Q8NE01 707 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 ENGASEQ8NFI3 743 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 ERMNQ8TAM6 284 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 ANP32BQ92688 251 aaKnown RBP6.73□□□□□ -1.33
HMGB3-202ENST00000419110 CALML4Q96GE6 196 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 AGBL1Q96MI9 1066 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 SDF4Q9BRK5 362 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 SLC4A5Q9BY07 1137 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 MAF1Q9H063 256 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 CUEDC2Q9H467 287 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 RRAGCQ9HB90 399 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 MAP3K20Q9NYL2 800 aaKnown RBP6.73□□□□□ -1.33
HMGB3-202ENST00000419110 FBXO40Q9UH90 709 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 MRVI1Q9Y6F6 885 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 RPTORQ8N122 1335 aa6.73□□□□□ -1.33
HMGB3-202ENST00000419110 TBX3O15119 743 aa6.72□□□□□ -1.33
HMGB3-202ENST00000419110 POLR2DO15514 142 aaKnown RBP6.72□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF202O95125 648 aa6.72□□□□□ -1.33
HMGB3-202ENST00000419110 SMC2O95347 1197 aa6.72□□□□□ -1.33
HMGB3-202ENST00000419110 CAVIN2O95810 425 aa6.72□□□□□ -1.33
HMGB3-202ENST00000419110 ZBTB48P10074 688 aaPredicted RBP6.72□□□□□ -1.33
HMGB3-202ENST00000419110 CETPP11597 493 aa6.72□□□□□ -1.33
HMGB3-202ENST00000419110 HOXA7P31268 230 aaPredicted RBP6.72□□□□□ -1.33
HMGB3-202ENST00000419110 MRE11P49959 708 aa6.72□□□□□ -1.33
HMGB3-202ENST00000419110 GTF2A2P52657 109 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms