RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 KIF13BQ9NQT8 1826 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 SHOX2O60902 331 aaPredicted RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 SLC1A4P43007 532 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 GNAQP50148 359 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 UBE2SQ16763 222 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 KRT25Q7Z3Z0 450 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 DNAAF5Q86Y56 855 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 C10orf67Q8IYJ2 551 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 ZNF444Q8N0Y2 327 aaPredicted RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 RASSF8Q8NHQ8 419 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 OSBPL9Q96SU4 736 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 NUP58Q9BVL2 599 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 MAGEF1Q9HAY2 307 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 DDX4Q9NQI0 724 aaKnown RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 RRP15Q9Y3B9 282 aaKnown RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 LRRC37AA6NMS7 1700 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 GRIN2DO15399 1336 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 NPHP3-ACAD11A0A0J9YXS1 232 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 RGL2O15211 777 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 PJA2O43164 708 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 KRT86O43790 486 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 SNHG28P0DPA3 235 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 TUBB4BP68371 445 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 GABPAQ06546 454 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 SLC20A2Q08357 652 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 SEMA3FQ13275 785 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 GRAPQ13588 217 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 RC3H1Q5TC82 1133 aaKnown RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 TTBK2Q6IQ55 1244 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 UNC13DQ70J99 1090 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 SPATA4Q8NEY3 305 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 GRAPLQ8TC17 118 aaPredicted RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 RAD54LQ92698 747 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 SECISBP2LQ93073 1101 aaKnown RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 UBR3Q6ZT12 1888 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 ZNF646O15015 1829 aaPredicted RBP10.96□□□□□ -0.65
SS18-203ENST00000415083 ZBTB48P10074 688 aaPredicted RBP10.96□□□□□ -0.65
SS18-203ENST00000415083 CYLC1P35663 651 aaPredicted RBP10.96□□□□□ -0.65
SS18-203ENST00000415083 WDR66Q8TBY9 1149 aa10.96□□□□□ -0.65
SS18-203ENST00000415083 DDX12PQ92771 950 aa10.96□□□□□ -0.65
SS18-203ENST00000415083 SH3GL2Q99962 352 aa10.96□□□□□ -0.65
SS18-203ENST00000415083 NYXQ9GZU5 481 aa10.96□□□□□ -0.65
SS18-203ENST00000415083 CD209Q9NNX6 404 aa10.96□□□□□ -0.65
SS18-203ENST00000415083 MAGEC2Q9UBF1 373 aaPredicted RBP10.96□□□□□ -0.65
SS18-203ENST00000415083 TTMPQ5BVD1 217 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 CNNM4Q6P4Q7 775 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 PDXDC1Q6P996 788 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 C15orf52Q6ZUT6 534 aaKnown RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 LRRC47Q8N1G4 583 aaKnown RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 PIK3R5Q8WYR1 880 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 LARP4BQ92615 738 aaKnown RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 MED4Q9NPJ6 270 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 RBM12Q9NTZ6 932 aaKnown RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 ANKIB1Q9P2G1 1089 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 POLLQ9UGP5 575 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 BICDL2A1A5D9 508 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 FAM153BP0C7A2 387 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 IL1R1P14778 569 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 AKR1B1P15121 316 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 FAM153CQ494X1 144 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 SPTY2D1Q68D10 685 aaPredicted RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 OLIG1Q8TAK6 271 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 PACSIN1Q9BY11 444 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 IFIH1Q9BYX4 1025 aaKnown RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 JADE2Q9NQC1 790 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 FAM153AQ9UHL3 310 aa10.96□□□□□ -0.66
SS18-203ENST00000415083 RBBP6Q7Z6E9 1792 aaKnown RBP10.96□□□□□ -0.66
SS18-203ENST00000415083 THSD7AQ9UPZ6 1657 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 GAKO14976 1311 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 NRXN2Q9P2S2 1712 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 LTBP4Q8N2S1 1624 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 PLIN4Q96Q06 1357 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 ESYT2A0FGR8 921 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 RBAK-RBAKDNI3L0D1 243 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 POLD1P28340 1107 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 HOXD13P35453 343 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 EIF6P56537 245 aaKnown RBP10.95□□□□□ -0.66
SS18-203ENST00000415083 STIM1Q13586 685 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 TPTE2Q6XPS3 522 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 RRAGAQ7L523 313 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 GUF1Q8N442 669 aaKnown RBP10.95□□□□□ -0.66
SS18-203ENST00000415083 ARL8AQ96BM9 186 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 JMJD4Q9H9V9 463 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 JRKLQ9Y4A0 524 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 BUB1O43683 1085 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 CALCRLQ16602 461 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 CCDC96Q2M329 555 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 REXO1Q8N1G1 1221 aaKnown RBP10.95□□□□□ -0.66
SS18-203ENST00000415083 MTMR4Q9NYA4 1195 aa10.95□□□□□ -0.66
SS18-203ENST00000415083 EIF3JO75822 258 aaKnown RBP10.94□□□□□ -0.66
SS18-203ENST00000415083 GLI1P08151 1106 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 PRLRP16471 622 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 TNNT3P45378 269 aaPredicted RBP10.94□□□□□ -0.66
SS18-203ENST00000415083 CACNB1Q02641 598 aaPredicted RBP10.94□□□□□ -0.66
SS18-203ENST00000415083 RASSF7Q02833 373 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 GPS2Q13227 327 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 MAN2A1Q16706 1144 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 ARSHQ5FYA8 562 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 FKBP15Q5T1M5 1219 aa10.94□□□□□ -0.66
SS18-203ENST00000415083 CCDC42Q96M95 316 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms