RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CEP85Q6P2H3 762 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 BICC1Q9H694 974 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 ATP8A1Q9Y2Q0 1164 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 IPO5O00410 1097 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 CC2D2BQ6DHV5 1058 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 TAF1BQ53T94 588 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 CNGB3Q9NQW8 809 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 TBK1Q9UHD2 729 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 PSMA3P25788 255 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 CNGA3Q16281 694 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 SGO2Q562F6 1265 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 MMS22LQ6ZRQ5 1243 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 ZNF555Q8NEP9 628 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 NLRP3Q96P20 1036 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 RNF103-CHMP3A0A140T963 221 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 ZNF233A6NK53 670 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 MEIS1O00470 390 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 FAM102BQ5T8I3 360 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 PPP2R2CQ9Y2T4 447 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 ANKRD36BQ8N2N9 1353 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 WDR64B1ANS9 1081 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 TCP11X2Q5H9J9 407 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 LVRNQ6Q4G3 990 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 NEK8Q86SG6 692 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 KCTD6Q8NC69 237 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 SMCR8Q8TEV9 937 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 ABCF3Q9NUQ8 709 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 GAPVD1Q14C86 1478 aa14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 EIF3BP55884 814 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-204ENST00000413716 COPB1P53618 953 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 ZBTB8OSQ8IWT0 167 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 APOBEC2Q9Y235 224 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 HNRNPRO43390 633 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 ZFP42Q96MM3 310 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 MTRF1O75570 445 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 DDX5P17844 614 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 BFSP2Q13515 415 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 IMPG1Q17R60 797 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 CAPRIN2Q6IMN6 1127 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 TAB3Q8N5C8 712 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 HIPK4Q8NE63 616 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 TMEM87BQ96K49 555 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 MMTAG2Q9BU76 263 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 KDM4CQ9H3R0 1056 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 SBNO1A3KN83 1393 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 NSD2O96028 1365 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 ECEL1O95672 775 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 HSPA4LO95757 839 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 ADPGKQ9BRR6 497 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 ANGEL1Q9UNK9 670 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 TTC6Q86TZ1 520 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 PARVGQ9HBI0 331 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 SYT2Q8N9I0 419 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 UHMK1Q8TAS1 419 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 LRWD1Q9UFC0 647 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 ATP8B1O43520 1251 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 SNX2O60749 519 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 RPS6KB1P23443 525 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 CNGA2Q16280 664 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 PTPROQ16827 1216 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 GPIHBP1Q8IV16 184 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 TPH2Q8IWU9 490 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 GAS7O60861 476 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 CNBD2Q96M20 576 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 DESI2Q9BSY9 194 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 FAM96AQ9H5X1 160 aa14.37□□□□□ -0.11
CCDC88A-204ENST00000413716 TRAPPC10P48553 1259 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 PPP1R2P3Q6NXS1 205 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 BTNL9Q6UXG8 535 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 ATP8B3O60423 1300 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 USH1GQ495M9 461 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 CYP4F22Q6NT55 531 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 DYMQ7RTS9 669 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC26A7Q8TE54 656 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 GID8Q9NWU2 228 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 USE1Q9NZ43 259 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 BPIFB4P59827 614 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC17A8Q8NDX2 589 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 EDEM3Q9BZQ6 932 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 TRAF3IP3Q9Y228 551 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 IBTKQ9P2D0 1353 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 ADCY3O60266 1144 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 SUPT3HO75486 399 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 NR1D1P20393 614 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 REXO1Q8N1G1 1221 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 AGBL1Q96MI9 1066 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 FMO2Q99518 471 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 ADNPQ9H2P0 1102 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 MBD2Q9UBB5 411 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 NUDT16Q96DE0 195 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC5A4Q9NY91 659 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 ADCY2Q08462 1091 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 DRP2Q13474 957 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 NELFCDQ8IXH7 590 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 EHHADHQ08426 723 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 CDC37L1Q7L3B6 337 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 FGD2Q7Z6J4 655 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 ZFP69BQ9UJL9 534 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 SYNJ2O15056 1496 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms