RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PAGR1Q9BTK6 254 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 A1CFQ9NQ94 594 aaKnown RBP7.52□□□□□ -1.21
VPS41-204ENST00000413141 CYP39A1Q9NYL5 469 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 FBXO40Q9UH90 709 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 TLL2Q9Y6L7 1015 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 PFASO15067 1338 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 TESPA1A2RU30 521 aaPredicted RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 POTEMA6NI47 508 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 PP2D1A8MPX8 630 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 CTAGE5O15320 804 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 MSH4O15457 936 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 POLR2DO15514 142 aaKnown RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 ACTN4O43707 911 aaKnown RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 SLC25A27O95847 323 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 SLC10A3P09131 477 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 EIF2AK2P19525 551 aaKnown RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 COPB2P35606 906 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 TECP42680 631 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 TXKP42681 527 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 ZNF157P51786 506 aaPredicted RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 PGM5Q15124 567 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 E2F4Q16254 413 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 LONRF3Q496Y0 759 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 CEP55Q53EZ4 464 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 PCNX4Q63HM2 1172 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 RGMBQ6NW40 437 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 KRBA2Q6ZNG9 492 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS41-204ENST00000413141 CKAP2LQ8IYA6 745 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 SLFN12Q8IYM2 578 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 FAM43AQ8N2R8 423 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 PDILTQ8N807 584 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 CYP2W1Q8TAV3 490 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 SMCR8Q8TEV9 937 aaPredicted RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 TAAR1Q96RJ0 339 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 PARK7Q99497 189 aaKnown RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 PDCD2LQ9BRP1 358 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 PYM1Q9BRP8 204 aaKnown RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 FUCA2Q9BTY2 467 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 MOV10L1Q9BXT6 1211 aaKnown RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 RAB34Q9BZG1 259 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 TTC12Q9H892 705 aaPredicted RBP7.51□□□□□ -1.21
VPS41-204ENST00000413141 PXMP2Q9NR77 195 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 DISC1Q9NRI5 854 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 RBPJLQ9UBG7 517 aa7.51□□□□□ -1.21
VPS41-204ENST00000413141 FSD2A1L4K1 749 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 MANSC4A6NHS7 340 aaPredicted RBP7.5□□□□□ -1.21
VPS41-204ENST00000413141 BCRP11274 1271 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ITGB5P18084 799 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ERCC3P19447 782 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 CDC25AP30304 524 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ZNF76P36508 570 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ERVK-9P63128 1117 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ERVK-24P63145 666 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 MRPS9P82933 396 aaKnown RBP7.5□□□□□ -1.21
VPS41-204ENST00000413141 SPIRE1Q08AE8 756 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 KARSQ15046 597 aaKnown RBP7.5□□□□□ -1.21
VPS41-204ENST00000413141 ARHGEF16Q5VV41 709 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 XRRA1Q6P2D8 792 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 NIPA1Q7RTP0 329 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 CABP7Q86V35 215 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 NCAPG2Q86XI2 1143 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 GAS2L3Q86XJ1 694 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 PLA2G4DQ86XP0 818 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ELOA2Q8IYF1 753 aaPredicted RBP7.5□□□□□ -1.21
VPS41-204ENST00000413141 ANKRD35Q8N283 1001 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 CNNM3Q8NE01 707 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 SHCBP1Q8NEM2 672 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 GJA10Q969M2 543 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 DHX58Q96C10 678 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 FAM20AQ96MK3 541 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 PURBQ96QR8 312 aaKnown RBP7.5□□□□□ -1.21
VPS41-204ENST00000413141 RMDN3Q96TC7 470 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 PTPN18Q99952 460 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 MXRA8Q9BRK3 442 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 SDF4Q9BRK5 362 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 MMTAG2Q9BU76 263 aaKnown RBP7.5□□□□□ -1.21
VPS41-204ENST00000413141 CCSER1Q9C0I3 900 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 MORF4L1Q9UBU8 362 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 LRWD1Q9UFC0 647 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 USP25Q9UHP3 1055 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 SERTAD1Q9UHV2 236 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 VAV3Q9UKW4 847 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 UBIAD1Q9Y5Z9 338 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 PLXNB2O15031 1838 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ZNF236Q9UL36 1845 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ASTN1O14525 1302 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 ADGRA2Q96PE1 1338 aa7.5□□□□□ -1.21
VPS41-204ENST00000413141 TMEM88BA6NKF7 163 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 FAM155AB1AL88 458 aaPredicted RBP7.49□□□□□ -1.21
VPS41-204ENST00000413141 IGF2BP3O00425 579 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS41-204ENST00000413141 MEIS1O00470 390 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 MARCH6O60337 910 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 TOMM70O94826 608 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 SLFN14P0C7P3 912 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 CCDC192P0DO97 292 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 PLCG1P19174 1290 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 CCND2P30279 289 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 UBA7P41226 1012 aa7.49□□□□□ -1.21
VPS41-204ENST00000413141 STAT6P42226 847 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms