RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 PRCPP42785 496 aa12.33□□□□□ -0.43
PTPRF-204ENST00000412568 NBPF11Q86T75 865 aa12.33□□□□□ -0.43
PTPRF-204ENST00000412568 CCDC50Q8IVM0 306 aa12.33□□□□□ -0.43
PTPRF-204ENST00000412568 VGLL2Q8N8G2 317 aa12.33□□□□□ -0.43
PTPRF-204ENST00000412568 TCRBV5S4A2TA0A5A2 114 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 SMIM23A6NLE4 172 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 TEX33O43247 280 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 LLGL1Q15334 1064 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 ARL6IP4Q66PJ3 421 aaKnown RBP12.33□□□□□ -0.44
PTPRF-204ENST00000412568 VPS18Q9P253 973 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 MYO1AQ9UBC5 1043 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 EPN1Q9Y6I3 576 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-204ENST00000412568 LRRIQ4A6NIV6 560 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 ARHGAP4P98171 946 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 KRT31Q15323 416 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 DPF2Q92785 391 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 SELENOOQ9BVL4 669 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 PLEKHG2Q9H7P9 1386 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 POTEFA5A3E0 1075 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 KRT19P08727 400 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 POTEIP0CG38 1075 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 DPEP1P16444 411 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 RASA3Q14644 834 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 SBK1Q52WX2 424 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 POTEGQ6S5H5 508 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 POTEEQ6S8J3 1075 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 TMEM39BQ9GZU3 492 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 TMEM60Q9H2L4 133 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 SPTLC3Q9NUV7 552 aa12.33□□□□□ -0.44
PTPRF-204ENST00000412568 MCF2L2Q86YR7 1114 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 PHF20Q9BVI0 1012 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 GPR75-ASB3A0A0A6YYF3 556 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 VGLL3A8MV65 326 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 DESP17661 470 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 DDR1Q08345 913 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 GNPTABQ3T906 1256 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 WDR44Q5JSH3 913 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 STRIP1Q5VSL9 837 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 KLHL7Q8IXQ5 586 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 U2AF1L4Q8WU68 220 aaKnown RBP12.32□□□□□ -0.44
PTPRF-204ENST00000412568 MTA3Q9BTC8 594 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 NDUFB10O96000 172 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 FCER1AP12319 257 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 GCFC2P16383 781 aaKnown RBP12.32□□□□□ -0.44
PTPRF-204ENST00000412568 GTF2A1P52655 376 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-204ENST00000412568 SLC15A2Q16348 729 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 RCSD1Q6JBY9 416 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 CCDC25Q86WR0 208 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 PPM1KQ8N3J5 372 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 CCDC51Q96ER9 411 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 EMILIN3Q9NT22 766 aa12.32□□□□□ -0.44
PTPRF-204ENST00000412568 PSMD14O00487 310 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 SPOPO43791 374 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 CEP104O60308 925 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 PDHBP11177 359 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 ARMCX5Q6P1M9 558 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 ADAT2Q7Z6V5 191 aaKnown RBP12.31□□□□□ -0.44
PTPRF-204ENST00000412568 DYDC1Q8WWB3 177 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 PRMT6Q96LA8 375 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-204ENST00000412568 PPP1R16BQ96T49 567 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 CTTNBP2NLQ9P2B4 639 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 TRPC6Q9Y210 931 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 TLDC2A0PJX2 215 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 SRGNP10124 158 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 FKBP3Q00688 224 aaKnown RBP12.31□□□□□ -0.44
PTPRF-204ENST00000412568 SAMD7Q7Z3H4 446 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 GOLGA6L10A0A0M3HER8 536 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 LRRN2O75325 713 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 CCNE1P24864 410 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 ATP2C1P98194 919 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-204ENST00000412568 SMC1AQ14683 1233 aaKnown RBP12.31□□□□□ -0.44
PTPRF-204ENST00000412568 DEPTORQ8TB45 409 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.31□□□□□ -0.44
PTPRF-204ENST00000412568 ANKFY1Q9P2R3 1169 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 NWD1Q149M9 1564 aa12.31□□□□□ -0.44
PTPRF-204ENST00000412568 PIK3C2AO00443 1686 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 NEBLO76041 1014 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 CD19P15391 556 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 ZNF543Q08ER8 600 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 NOX5Q96PH1 765 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 SH3GLB2Q9NR46 395 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 SEPT9Q9UHD8 586 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-204ENST00000412568 RGPD8O14715 1765 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-204ENST00000412568 CNTNAP5Q8WYK1 1306 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 ATP2C2O75185 946 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 FMR1Q06787 632 aaKnown RBP eCLIP12.3□□□□□ -0.44
PTPRF-204ENST00000412568 C16orf86Q6ZW13 317 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 HDXQ7Z353 690 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 BANK1Q8NDB2 785 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 ENGASEQ8NFI3 743 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 CEP170P1Q96L14 293 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 LMBR1Q8WVP7 490 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 DHTKD1Q96HY7 919 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-204ENST00000412568 RGL1Q9NZL6 768 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 USTQ9Y2C2 406 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 ABCB11O95342 1321 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 AP5Z1O43299 807 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 TAL1P17542 331 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-204ENST00000412568 STAT1P42224 750 aa12.3□□□□□ -0.44
PTPRF-204ENST00000412568 RCAN1P53805 252 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms