RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PRSS53Q2L4Q9 553 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 FIBCD1Q8N539 461 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 WHRNQ9P202 907 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 SUGT1Q9Y2Z0 365 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 PCDHB12Q9Y5F1 795 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 CAPN6Q9Y6Q1 641 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 BRWD3Q6RI45 1802 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 KIF20BQ96Q89 1820 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 RNF225M0QZC1 329 aaPredicted RBP8.4□□□□□ -1.06
USP40-202ENST00000409945 VAMP4O75379 141 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 ITIH2P19823 946 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 NFIAQ12857 509 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 SFRP5Q5T4F7 317 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.06
USP40-202ENST00000409945 APBA2Q99767 749 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 EMC9Q9Y3B6 208 aa8.4□□□□□ -1.06
USP40-202ENST00000409945 KIF24Q5T7B8 1368 aa8.4□□□□□ -1.07
USP40-202ENST00000409945 THSD7AQ9UPZ6 1657 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 FAM181BA6NEQ2 426 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 EIF5BO60841 1220 aaKnown RBP8.39□□□□□ -1.07
USP40-202ENST00000409945 ASMTLO95671 621 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 PLEKHG4Q58EX7 1191 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 RNF43Q68DV7 783 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 CRTC3Q6UUV7 619 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 KIAA0907Q7Z7F0 614 aaPredicted RBP8.39□□□□□ -1.07
USP40-202ENST00000409945 BVESQ8NE79 360 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 ZDHHC15Q96MV8 337 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 LRP2BPQ9P2M1 347 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 NSD2O96028 1365 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 BLACEA4D250 179 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 ANKRD62A6NC57 917 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 KCNH1O95259 989 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 GDF11O95390 407 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 ZNF865P0CJ78 1059 aaPredicted RBP8.39□□□□□ -1.07
USP40-202ENST00000409945 IL2RBP14784 551 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 RNF4P78317 190 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 ARHGEF39Q8N4T4 335 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 SHKBP1Q8TBC3 707 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 APPBP2Q92624 585 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 OSBP2Q969R2 916 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 ZNF669Q96BR6 464 aaPredicted RBP8.39□□□□□ -1.07
USP40-202ENST00000409945 LTV1Q96GA3 475 aaPredicted RBP8.39□□□□□ -1.07
USP40-202ENST00000409945 EPN3Q9H201 632 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 PANK3Q9H999 370 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 PLAGL2Q9UPG8 496 aa8.39□□□□□ -1.07
USP40-202ENST00000409945 MYOM1P52179 1685 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 COL18A1P39060 1754 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 MAP3K19Q56UN5 1328 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 OVOS2A0A0G2JMS6 1433 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 FAM208AQ9UK61 1670 aaKnown RBP8.38□□□□□ -1.07
USP40-202ENST00000409945 WDR64B1ANS9 1081 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 PPM1GO15355 546 aaPredicted RBP8.38□□□□□ -1.07
USP40-202ENST00000409945 HOXC9P31274 260 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 OXCT1P55809 520 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 NMIQ13287 307 aaPredicted RBP8.38□□□□□ -1.07
USP40-202ENST00000409945 KISS1RQ969F8 398 aaPredicted RBP8.38□□□□□ -1.07
USP40-202ENST00000409945 IER2Q9BTL4 223 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 DUSP15Q9H1R2 295 aaPredicted RBP8.38□□□□□ -1.07
USP40-202ENST00000409945 AKT3Q9Y243 479 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 GPR55Q9Y2T6 319 aaPredicted RBP8.38□□□□□ -1.07
USP40-202ENST00000409945 FLT4P35916 1363 aa8.38□□□□□ -1.07
USP40-202ENST00000409945 RGPD5Q99666 1765 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 RRS1Q15050 365 aaKnown RBP8.37□□□□□ -1.07
USP40-202ENST00000409945 CDKAL1Q5VV42 579 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 DENND5AQ6IQ26 1287 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 SPACA3Q8IXA5 215 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 CLUHP3Q96NS8 147 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 HDAC8Q9BY41 377 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 ST14Q9Y5Y6 855 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 FHOD1Q9Y613 1164 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 RGPD1P0DJD0 1748 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 PARP4Q9UKK3 1724 aaKnown RBP8.37□□□□□ -1.07
USP40-202ENST00000409945 ITGA4P13612 1032 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 ZNF143P52747 638 aaPredicted RBP8.37□□□□□ -1.07
USP40-202ENST00000409945 DPY19L1Q2PZI1 675 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 NKAPLQ5M9Q1 402 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 NOL9Q5SY16 702 aaKnown RBP8.37□□□□□ -1.07
USP40-202ENST00000409945 MORC1Q86VD1 984 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 TRIM59Q8IWR1 403 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 LRRC47Q8N1G4 583 aaKnown RBP8.37□□□□□ -1.07
USP40-202ENST00000409945 PLD6Q8N2A8 252 aaKnown RBP8.37□□□□□ -1.07
USP40-202ENST00000409945 MFSD4AQ8N468 514 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 RAPGEF4Q8WZA2 1011 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 LRRC4CQ9HCJ2 640 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 EP400Q96L91 3159 aa8.37□□□□□ -1.07
USP40-202ENST00000409945 ARNTLO00327 626 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 SIGLEC6O43699 453 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 PPM1BO75688 479 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 GYS2P54840 703 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 GTF2IRD2BQ6EKJ0 949 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 GTF2IRD2Q86UP8 949 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 HOMER1Q86YM7 354 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 RCC1LQ96I51 464 aaKnown RBP8.36□□□□□ -1.07
USP40-202ENST00000409945 GBP3Q9H0R5 595 aa8.36□□□□□ -1.07
USP40-202ENST00000409945 MRPS23Q9Y3D9 190 aaKnown RBP8.36□□□□□ -1.07
USP40-202ENST00000409945 INSRP06213 1382 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 PRODHO43272 600 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 SRFP11831 508 aa8.35□□□□□ -1.07
USP40-202ENST00000409945 RSPO4Q2I0M5 234 aaPredicted RBP8.35□□□□□ -1.07
USP40-202ENST00000409945 DALRD3Q5D0E6 543 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms