RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 KLHL23Q8NBE8 558 aa11.76□□□□□ -0.53
NIF3L1-204ENST00000409357 TRPM4Q8TD43 1214 aa11.76□□□□□ -0.53
NIF3L1-204ENST00000409357 ZIM3Q96PE6 472 aa11.76□□□□□ -0.53
NIF3L1-204ENST00000409357 HAUS7Q99871 368 aa11.76□□□□□ -0.53
NIF3L1-204ENST00000409357 STIM2Q9P246 746 aa11.76□□□□□ -0.53
NIF3L1-204ENST00000409357 POLR2AP24928 1970 aaKnown RBP11.76□□□□□ -0.53
NIF3L1-204ENST00000409357 KIF28PB7ZC32 967 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CDKL5O76039 1030 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 PTPREP23469 700 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 IGHMBP2P38935 993 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 VAV2P52735 878 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 HIRAP54198 1017 aaPredicted RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 BIRC3Q13489 604 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 ZNF268Q14587 947 aaPredicted RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CFAP58Q5T655 872 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CWF19L1Q69YN2 538 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 PNMA8AQ86V59 439 aaPredicted RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 IFT20Q8IY31 132 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 WHAMMQ8TF30 809 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CCT6BQ92526 530 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CENPTQ96BT3 561 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 IQCDQ96DY2 449 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 GSDMAQ96QA5 445 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 EYA3Q99504 573 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 ZC3H12CQ9C0D7 883 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CENPHQ9H3R5 247 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 SLC39A2Q9NP94 309 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 GDF3Q9NR23 364 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 EME2A4GXA9 379 aaPredicted RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 IFIT3O14879 490 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 TFRCP02786 760 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 HDLBPQ00341 1268 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CHRNDQ07001 517 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 KCNB1Q14721 858 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 SH3RF1Q7Z6J0 888 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CREG2Q8IUH2 290 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 MICALL2Q8IY33 904 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 CACNA2D3Q8IZS8 1091 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 KBTBD3Q8NAB2 608 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 HELBQ8NG08 1087 aaPredicted RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 NSMCE1Q8WV22 266 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 NCOA5Q9HCD5 579 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 NOP53Q9NZM5 478 aaKnown RBP11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 SNX12Q9UMY4 172 aa11.75□□□□□ -0.53
NIF3L1-204ENST00000409357 MYH8P13535 1937 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 PDE2AO00408 941 aaPredicted RBP11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 TRAF5O00463 557 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 MAGEA8P43361 318 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 PAK2Q13177 524 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 IFIT5Q13325 482 aaKnown RBP11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 TNIP1Q15025 636 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 AGBL2Q5U5Z8 902 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 SLC30A9Q6PML9 568 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 SAMD7Q7Z3H4 446 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 RETREG2Q8NC44 543 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 TSEN2Q8NCE0 465 aaKnown RBP11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 KLRG1Q96E93 195 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 ALS2CR12Q96Q35 445 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 SLF1Q9BQI6 1058 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 TMBIM4Q9HC24 238 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 COPRSQ9NQ92 184 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 ADARB2Q9NS39 739 aaKnown RBP11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 ZNHIT6Q9NWK9 470 aaKnown RBP11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 CNOT7Q9UIV1 285 aaKnown RBP11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 HPS5Q9UPZ3 1129 aa11.74□□□□□ -0.53
NIF3L1-204ENST00000409357 TRPM7Q96QT4 1865 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SYNRGQ9UMZ2 1314 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 ZNF233A6NK53 670 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 ABL1P00519 1130 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 ATP2B4P23634 1241 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CCND1P24385 295 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 MARCKSP29966 332 aaPredicted RBP11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 KRT9P35527 623 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CYLC1P35663 651 aaPredicted RBP11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 HERVK_113P62684 666 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 ATP2B2Q01814 1243 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 ITIH4Q14624 930 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SEPT2Q15019 361 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CDC37Q16543 378 aaPredicted RBP11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 TBC1D25Q3MII6 688 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 ZMYM1Q5SVZ6 1142 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CCDC122Q5T0U0 273 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 MTHFD1LQ6UB35 978 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 DLK2Q6UY11 383 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 USP50Q70EL3 339 aaPredicted RBP11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CACNA2D4Q7Z3S7 1137 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 VPS37DQ86XT2 251 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 RPUSD2Q8IZ73 545 aaKnown RBP11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SPATA4Q8NEY3 305 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CAGE1Q8TC20 777 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 DTNBP1Q96EV8 351 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SEC16BQ96JE7 1060 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SCLT1Q96NL6 688 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 MXD3Q9BW11 206 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 CCDC8Q9H0W5 538 aaPredicted RBP11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 KCNMB3Q9NPA1 279 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 HAUS2Q9NVX0 235 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SWAP70Q9UH65 585 aa11.73□□□□□ -0.53
NIF3L1-204ENST00000409357 SLC12A6Q9UHW9 1150 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms