RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 PPP4R3AQ6IN85 833 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 PPP1R18Q6NYC8 613 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 KRT26Q7Z3Y9 468 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 HPS3Q969F9 1004 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 FAM207AQ9NSI2 230 aaPredicted RBP11.91□□□□□ -0.5
CLIP4-204ENST00000404424 HYOU1Q9Y4L1 999 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 ZC3H4Q9UPT8 1303 aaKnown RBP11.91□□□□□ -0.5
CLIP4-204ENST00000404424 USP17L5A8MUK1 530 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 PLEKP08567 350 aaPredicted RBP11.91□□□□□ -0.5
CLIP4-204ENST00000404424 EIF4A3P38919 411 aaKnown RBP11.91□□□□□ -0.5
CLIP4-204ENST00000404424 TMEM119Q4V9L6 283 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 RNF10Q8N5U6 811 aaKnown RBP11.91□□□□□ -0.5
CLIP4-204ENST00000404424 SELENOOQ9BVL4 669 aa11.91□□□□□ -0.5
CLIP4-204ENST00000404424 TNRC6CQ9HCJ0 1690 aaKnown RBP11.9□□□□□ -0.5
CLIP4-204ENST00000404424 LRRC53A6NM62 1247 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 NKRFO15226 690 aaKnown RBP eCLIP11.9□□□□□ -0.5
CLIP4-204ENST00000404424 MAGEA1P43355 309 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 RHBDL3P58872 404 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 C2orf54Q08AI8 447 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 FAM98CQ17RN3 349 aaKnown RBP11.9□□□□□ -0.5
CLIP4-204ENST00000404424 LRRC55Q6ZSA7 311 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 RRAGAQ7L523 313 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 DYMQ7RTS9 669 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 SRLQ86TD4 932 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 SNX29Q8TEQ0 813 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 AENQ8WTP8 325 aaKnown RBP11.9□□□□□ -0.5
CLIP4-204ENST00000404424 TBC1D22AQ8WUA7 517 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 BAP1Q92560 729 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 DDX12PQ92771 950 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 OSBPL9Q96SU4 736 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 UBA5Q9GZZ9 404 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 TMEM260Q9NX78 707 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 TSKSQ9UJT2 592 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 CAPN6Q9Y6Q1 641 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 CDK5RAP2Q96SN8 1893 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 GAKO14976 1311 aa11.9□□□□□ -0.5
CLIP4-204ENST00000404424 EPHB6O15197 1021 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 SLC37A4O43826 429 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 SNHG28P0DPA3 235 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 FKBP3Q00688 224 aaKnown RBP11.89□□□□□ -0.51
CLIP4-204ENST00000404424 ASTE1Q2TB18 679 aaPredicted RBP11.89□□□□□ -0.51
CLIP4-204ENST00000404424 PDXDC1Q6P996 788 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 SPATA4Q8NEY3 305 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 SYN2Q92777 582 aaPredicted RBP11.89□□□□□ -0.51
CLIP4-204ENST00000404424 MTMR4Q9NYA4 1195 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 RNF14Q9UBS8 474 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 FEZ2Q9UHY8 353 aaPredicted RBP11.89□□□□□ -0.51
CLIP4-204ENST00000404424 CCNL1Q9UK58 526 aaPredicted RBP11.89□□□□□ -0.51
CLIP4-204ENST00000404424 MYO1CO00159 1063 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 MOCS3O95396 460 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 PAFAH1B1P43034 410 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 CACNA2D4Q7Z3S7 1137 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 MYOCDQ8IZQ8 938 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 CNBD1Q8NA66 436 aa11.89□□□□□ -0.51
CLIP4-204ENST00000404424 LUC7LQ9NQ29 371 aaKnown RBP11.89□□□□□ -0.51
CLIP4-204ENST00000404424 RBAK-RBAKDNI3L0D1 243 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 EDIL3O43854 480 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 TDP2O95551 362 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GNA14O95837 355 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 MYBL2P10244 700 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 RFC4P35249 363 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GGCXP38435 758 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GPSM2P81274 684 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GLE1Q53GS7 698 aaKnown RBP11.88□□□□□ -0.51
CLIP4-204ENST00000404424 CCDC181Q5TID7 509 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 SMCR8Q8TEV9 937 aaPredicted RBP11.88□□□□□ -0.51
CLIP4-204ENST00000404424 COA7Q96BR5 231 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 NOX5Q96PH1 765 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 NAP1L4Q99733 375 aaKnown RBP11.88□□□□□ -0.51
CLIP4-204ENST00000404424 MLXIPQ9HAP2 919 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 BMP2KQ9NSY1 1161 aaPredicted RBP11.88□□□□□ -0.51
CLIP4-204ENST00000404424 CEP72Q9P209 647 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GGA1Q9UJY5 639 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 COL4A3BPQ9Y5P4 624 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 PNMA6FA0A0J9YX94 578 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GOLGA6BA6NDN3 693 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 POTEMA6NI47 508 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 SLC26A4O43511 780 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 ZMYND10O75800 440 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 UFL1O94874 794 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 GCFC2P16383 781 aaKnown RBP11.88□□□□□ -0.51
CLIP4-204ENST00000404424 TNFRSF8P28908 595 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 SLC9C1Q4G0N8 1177 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 TRAPPC3LQ5T215 181 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 LRRC31Q6UY01 552 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 CEP63Q96MT8 703 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 NT5C3AQ9H0P0 336 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 RRP15Q9Y3B9 282 aaKnown RBP11.88□□□□□ -0.51
CLIP4-204ENST00000404424 KDM3AQ9Y4C1 1321 aa11.88□□□□□ -0.51
CLIP4-204ENST00000404424 AGPSO00116 658 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 CLK2P49760 499 aaKnown RBP11.87□□□□□ -0.51
CLIP4-204ENST00000404424 EPHB4P54760 987 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 ZCWPW2Q504Y3 356 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 MFSD14BQ5SR56 506 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 HYIQ5T013 277 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 EMBQ6PCB8 327 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 CERKQ8TCT0 537 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 RPGRQ92834 1020 aaKnown RBP11.87□□□□□ -0.51
CLIP4-204ENST00000404424 DNAJC19Q96DA6 116 aa11.87□□□□□ -0.51
CLIP4-204ENST00000404424 TRERF1Q96PN7 1200 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms