RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SPZ1Q9BXG8 430 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 PRO3102Q9H379 93 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 RIOX1Q9H6W3 641 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 PRDM6Q9NQX0 595 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 RBM28Q9NW13 759 aaKnown RBP10.66□□□□□ -0.7
VPS53-203ENST00000401468 LIMCH1Q9UPQ0 1083 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 ATP11BQ9Y2G3 1177 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 EYSQ5T1H1 3165 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 CCDC196A0A1B0GTZ2 297 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 KLRF2D3W0D1 207 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 ATP2A1O14983 1001 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 ADCY6O43306 1168 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 CYTH3O43739 400 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 LARGE1O95461 756 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 HOXC6P09630 235 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 FDX1P10109 184 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 COL6A1P12109 1028 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 SLC16A2P36021 539 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 ADCYAP1R1P41586 468 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 GNAQP50148 359 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 METAP2P50579 478 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS53-203ENST00000401468 RTP1P59025 263 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 CNTN2Q02246 1040 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 ST3GAL1Q11201 340 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 SCRN1Q12765 414 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 KCTD2Q14681 263 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 KMT5BQ4FZB7 885 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 TTBK2Q6IQ55 1244 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 SYNE3Q6ZMZ3 975 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 MICU3Q86XE3 530 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 RIOX2Q8IUF8 465 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 MB21D1Q8N884 522 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 ANKLE1Q8NAG6 615 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 PRPF38AQ8NAV1 312 aaKnown RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 SHCBP1Q8NEM2 672 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 CTCFLQ8NI51 663 aaPredicted RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 CHURC1Q8WUH1 139 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 GTF3C6Q969F1 213 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 ZSCAN31Q96LW9 406 aaPredicted RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 MYL10Q9BUA6 226 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 MROH8Q9H579 483 aa10.65□□□□□ -0.7
VPS53-203ENST00000401468 PRDM5Q9NQX1 630 aaPredicted RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 SH2B1Q9NRF2 756 aaPredicted RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 ZHX1Q9UKY1 873 aaPredicted RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 CTDP1Q9Y5B0 961 aaPredicted RBP10.65□□□□□ -0.7
VPS53-203ENST00000401468 CNTNAP5Q8WYK1 1306 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 MYADML2A6NDP7 307 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 GOLGA8AA7E2F4 631 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 IGHA2P01877 340 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 OATP04181 439 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 CFHP08603 1231 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 IFNAR1P17181 557 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 RTN1Q16799 776 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 CCDC96Q2M329 555 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 ZNF792Q3KQV3 632 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 TRIM60Q495X7 471 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 OLFML2BQ68BL8 750 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 BLOC1S3Q6QNY0 202 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 SH3RF1Q7Z6J0 888 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 SRBD1Q8N5C6 995 aaKnown RBP10.64□□□□□ -0.71
VPS53-203ENST00000401468 DDX11Q96FC9 970 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 UBE2OQ9C0C9 1292 aaKnown RBP10.64□□□□□ -0.71
VPS53-203ENST00000401468 RANBP17Q9H2T7 1088 aaKnown RBP10.64□□□□□ -0.71
VPS53-203ENST00000401468 CPVLQ9H3G5 476 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 SLC38A10Q9HBR0 1119 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 GPCPD1Q9NPB8 672 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 PRR12Q9ULL5 1215 aa10.64□□□□□ -0.71
VPS53-203ENST00000401468 ZNF536O15090 1300 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 STRNO43815 780 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 PLEKHA8P1O95397 391 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 CTDNEP1O95476 244 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 SLC25A27O95847 323 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 GOLGA8HP0CJ92 632 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 ALAS1P13196 640 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 RXRAP19793 462 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 ADD1P35611 737 aaKnown RBP10.63□□□□□ -0.71
VPS53-203ENST00000401468 OAZ1P54368 228 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 CUL4AQ13619 759 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 LRRC41Q15345 812 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 MUM1L1Q5H9M0 696 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 TMEM63BQ5T3F8 832 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 SYDE2Q5VT97 1194 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS53-203ENST00000401468 ADGRF4Q8IZF3 695 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 PPP1R13LQ8WUF5 828 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 NUP133Q8WUM0 1156 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 TMX3Q96JJ7 454 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 FGD4Q96M96 766 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 GDF15Q99988 308 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 LLPHQ9BRT6 129 aaKnown RBP10.63□□□□□ -0.71
VPS53-203ENST00000401468 TINF2Q9BSI4 451 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 TEX13BQ9BXU2 312 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 JMJD4Q9H9V9 463 aa10.63□□□□□ -0.71
VPS53-203ENST00000401468 STK36Q9NRP7 1315 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 KBTBD13C9JR72 458 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 SEPT4O43236 478 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 ZBED4O75132 1171 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 SNAI1O95863 264 aaPredicted RBP10.62□□□□□ -0.71
VPS53-203ENST00000401468 ZNF865P0CJ78 1059 aaPredicted RBP10.62□□□□□ -0.71
VPS53-203ENST00000401468 EEPD1Q7L9B9 569 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms