RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 EFCAB13Q8IY85 973 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 MCM3P25205 808 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 EHHADHQ08426 723 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 COA7Q96BR5 231 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 PIGSQ96S52 555 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 NUP58Q9BVL2 599 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 FRMPD2Q68DX3 1309 aaPredicted RBP23.23■■□□□ 1.31
CTCF-202ENST00000401394 NDUFAB1O14561 156 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 HEXIM1O94992 359 aaKnown RBP23.23■■□□□ 1.31
CTCF-202ENST00000401394 SH3GL2Q99962 352 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 PYM1Q9BRP8 204 aaKnown RBP23.23■■□□□ 1.31
CTCF-202ENST00000401394 LRRC4CQ9HCJ2 640 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 SSBP05455 408 aaKnown RBP eCLIP23.23■■□□□ 1.31
CTCF-202ENST00000401394 SLURP2P0DP57 97 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 KLRC1P26715 233 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 HPDP32754 393 aaPredicted RBP23.23■■□□□ 1.31
CTCF-202ENST00000401394 UBE4AQ14139 1066 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 CACNA2D4Q7Z3S7 1137 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 RPGRIP1Q96KN7 1286 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 PNMA5Q96PV4 448 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.23■■□□□ 1.31
CTCF-202ENST00000401394 HYOU1Q9Y4L1 999 aa23.23■■□□□ 1.31
CTCF-202ENST00000401394 NPHP3-ACAD11A0A0J9YXS1 232 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 HIBADHP31937 336 aaKnown RBP23.22■■□□□ 1.31
CTCF-202ENST00000401394 HGSNATQ68CP4 663 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 FBXO33Q7Z6M2 555 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 DZIP1Q86YF9 867 aaKnown RBP23.22■■□□□ 1.31
CTCF-202ENST00000401394 AMOTL1Q8IY63 956 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 GPATCH11Q8N954 259 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 A0A087WUV0 522 aaPredicted RBP23.22■■□□□ 1.31
CTCF-202ENST00000401394 PIK3R5Q8WYR1 880 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 RUFY1Q96T51 708 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 ARAP2Q8WZ64 1704 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 GRM4Q14833 912 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 C12orf60Q5U649 245 aa23.22■■□□□ 1.31
CTCF-202ENST00000401394 FNBP4Q8N3X1 1017 aaPredicted RBP23.22■■□□□ 1.31
CTCF-202ENST00000401394 BSDC1Q9NW68 430 aaPredicted RBP23.22■■□□□ 1.31
CTCF-202ENST00000401394 BICDL2A1A5D9 508 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 EDIL3O43854 480 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 CASKIN2Q8WXE0 1202 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 C7orf25Q9BPX7 421 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 CAPN7Q9Y6W3 813 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 ANKRD36CQ5JPF3 1778 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 LOC102724159A0A0B4J2E5 919 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 POLR2FP61218 127 aaKnown RBP23.21■■□□□ 1.31
CTCF-202ENST00000401394 PWP2Q15269 919 aaKnown RBP23.21■■□□□ 1.31
CTCF-202ENST00000401394 CENPPQ6IPU0 288 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 ADAMTS1Q9UHI8 967 aa23.21■■□□□ 1.31
CTCF-202ENST00000401394 HSF2BPO75031 334 aa23.2■■□□□ 1.3
CTCF-202ENST00000401394 CCDC70Q6NSX1 233 aa23.2■■□□□ 1.3
CTCF-202ENST00000401394 ZNF662Q6ZS27 426 aa23.2■■□□□ 1.3
CTCF-202ENST00000401394 PTF1AQ7RTS3 328 aa23.2■■□□□ 1.3
CTCF-202ENST00000401394 TBC1D5Q92609 795 aa23.2■■□□□ 1.3
CTCF-202ENST00000401394 SRP68Q9UHB9 627 aaKnown RBP23.2■■□□□ 1.3
CTCF-202ENST00000401394 HNRNPH1P31943 449 aaKnown RBP23.2■■□□□ 1.3
CTCF-202ENST00000401394 RETREG2Q8NC44 543 aa23.2■■□□□ 1.3
CTCF-202ENST00000401394 PARP10Q53GL7 1025 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 TBC1D9BQ66K14 1250 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 BCAS3Q9H6U6 928 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 ARPP21Q9UBL0 812 aaPredicted RBP23.19■■□□□ 1.3
CTCF-202ENST00000401394 NOL4O94818 638 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 ACTN1P12814 892 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 EPHB4P54760 987 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 ATP8A2Q9NTI2 1148 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 A0A087X0T9 212 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 FAM228BP0C875 321 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 PAFAH1B1P43034 410 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 NONOQ15233 471 aaKnown RBP eCLIP23.19■■□□□ 1.3
CTCF-202ENST00000401394 ASTE1Q2TB18 679 aaPredicted RBP23.19■■□□□ 1.3
CTCF-202ENST00000401394 LRRC55Q6ZSA7 311 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 DDX12PQ92771 950 aa23.19■■□□□ 1.3
CTCF-202ENST00000401394 MYH14Q7Z406 1995 aaKnown RBP23.18■■□□□ 1.3
CTCF-202ENST00000401394 ZNF444Q8N0Y2 327 aaPredicted RBP23.18■■□□□ 1.3
CTCF-202ENST00000401394 ALS2CR12Q96Q35 445 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 AP1M1Q9BXS5 423 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 SHTN1A0MZ66 631 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 INPP5BP32019 993 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 UBE2SQ16763 222 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 PDXDC1Q6P996 788 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 SV2BQ7L1I2 683 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 NEK8Q86SG6 692 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 FAM133AQ8N9E0 248 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 TSGA10Q9BZW7 698 aa23.18■■□□□ 1.3
CTCF-202ENST00000401394 ABCA3Q99758 1704 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 USP17L5A8MUK1 530 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 IQCEQ6IPM2 695 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 A0A1W2PQJ5 194 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 PALM3A6NDB9 673 aaPredicted RBP23.17■■□□□ 1.3
CTCF-202ENST00000401394 RAD51CO43502 376 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 GUCY2CP25092 1073 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 HDLBPQ00341 1268 aaKnown RBP23.17■■□□□ 1.3
CTCF-202ENST00000401394 SPRED3Q2MJR0 410 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 CNNM4Q6P4Q7 775 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 FAM114A1Q8IWE2 563 aa23.17■■□□□ 1.3
CTCF-202ENST00000401394 NOC3LQ8WTT2 800 aaKnown RBP23.17■■□□□ 1.3
CTCF-202ENST00000401394 LSM14BQ9BX40 385 aaKnown RBP23.17■■□□□ 1.3
CTCF-202ENST00000401394 PPANQ9NQ55 473 aaKnown RBP23.17■■□□□ 1.3
CTCF-202ENST00000401394 TRAF5O00463 557 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 TCP1P17987 556 aaKnown RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 FLT3P36888 993 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms