RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SOGA3Q5TF21 947 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 REXO1Q8N1G1 1221 aaKnown RBP14.09□□□□□ -0.15
SHMT1-205ENST00000395684 GUF1Q8N442 669 aaKnown RBP14.09□□□□□ -0.15
SHMT1-205ENST00000395684 LARP4BQ92615 738 aaKnown RBP14.09□□□□□ -0.15
SHMT1-205ENST00000395684 MTMR8Q96EF0 704 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 TLR10Q9BXR5 811 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 HYOU1Q9Y4L1 999 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 POTEMA6NI47 508 aa14.08□□□□□ -0.15
SHMT1-205ENST00000395684 TCP1P17987 556 aaKnown RBP14.08□□□□□ -0.15
SHMT1-205ENST00000395684 CORO7P57737 925 aa14.08□□□□□ -0.15
SHMT1-205ENST00000395684 RASSF7Q02833 373 aa14.08□□□□□ -0.15
SHMT1-205ENST00000395684 LRRC41Q15345 812 aa14.08□□□□□ -0.15
SHMT1-205ENST00000395684 HAUS3Q68CZ6 603 aa14.08□□□□□ -0.15
SHMT1-205ENST00000395684 SEC63Q9UGP8 760 aaKnown RBP14.08□□□□□ -0.15
SHMT1-205ENST00000395684 SNED1Q8TER0 1413 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 PJA2O43164 708 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 TDP2O95551 362 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 MAGEA9P43362 315 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 IRAK1P51617 712 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 KCNMA1Q12791 1236 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 CALCRLQ16602 461 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 HGSNATQ68CP4 663 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 KCNK18Q7Z418 384 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 TSEN2Q8NCE0 465 aaKnown RBP14.08□□□□□ -0.16
SHMT1-205ENST00000395684 NEDD1Q8NHV4 660 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 CEP95Q96GE4 821 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 GPR101Q96P66 508 aaPredicted RBP14.08□□□□□ -0.16
SHMT1-205ENST00000395684 ALS2CR12Q96Q35 445 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 ANKIB1Q9P2G1 1089 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 COL5A3P25940 1745 aaPredicted RBP14.08□□□□□ -0.16
SHMT1-205ENST00000395684 ABCB11O95342 1321 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 USP17L5A8MUK1 530 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 BUB1O43683 1085 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 FXR2P51116 673 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHMT1-205ENST00000395684 KLHDC7AQ5VTJ3 777 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 PDXDC1Q6P996 788 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 C16orf86Q6ZW13 317 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 SH3GL2Q99962 352 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 RTFDC1Q9BY42 306 aaPredicted RBP14.08□□□□□ -0.16
SHMT1-205ENST00000395684 EHD4Q9H223 541 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 RBM12Q9NTZ6 932 aaKnown RBP14.08□□□□□ -0.16
SHMT1-205ENST00000395684 STIM2Q9P246 746 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 STK17AQ9UEE5 414 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 NARFQ9UHQ1 456 aa14.08□□□□□ -0.16
SHMT1-205ENST00000395684 MYH10P35580 1976 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 SLC1A4P43007 532 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 GSTO1P78417 241 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 LRRC63Q05C16 580 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 EHHADHQ08426 723 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 TPTE2Q6XPS3 522 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 DDX12PQ92771 950 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 MS4A14Q96JA4 679 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 NFIXQ14938 502 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 ECM1Q16610 540 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 CCDC181Q5TID7 509 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 TMC4Q7Z404 712 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 RUBCNQ92622 972 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 RAD54LQ92698 747 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 COA7Q96BR5 231 aa14.07□□□□□ -0.16
SHMT1-205ENST00000395684 FGFR1OPO95684 399 aaKnown RBP14.06□□□□□ -0.16
SHMT1-205ENST00000395684 BTDP43251 543 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 ORC2Q13416 577 aaPredicted RBP14.06□□□□□ -0.16
SHMT1-205ENST00000395684 DNAJC21Q5F1R6 531 aaKnown RBP14.06□□□□□ -0.16
SHMT1-205ENST00000395684 PTF1AQ7RTS3 328 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 CACNA2D4Q7Z3S7 1137 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 CDK5RAP3Q96JB5 506 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 RIOX1Q9H6W3 641 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 ZNF287Q9HBT7 754 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 NLRC4Q9NPP4 1024 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 ESYT2A0FGR8 921 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 TLR2O60603 784 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 NOL4O94818 638 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 SMARCA1P28370 1054 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 PAFAH1B1P43034 410 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 EPHB4P54760 987 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 PACS2Q86VP3 889 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 SNX29Q8TEQ0 813 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 ARL8AQ96BM9 186 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 TANGO6Q9C0B7 1094 aa14.06□□□□□ -0.16
SHMT1-205ENST00000395684 LTBP4Q8N2S1 1624 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 FRMPD2Q68DX3 1309 aaPredicted RBP14.05□□□□□ -0.16
SHMT1-205ENST00000395684 SSU72P8A0A1W2PR75 194 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 PPFIA1Q13136 1202 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 EMBQ6PCB8 327 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 NOX5Q96PH1 765 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 CNTNAP4Q9C0A0 1308 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 LDHCP07864 332 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 NOP2P46087 812 aaKnown RBP14.05□□□□□ -0.16
SHMT1-205ENST00000395684 APBA1Q02410 837 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 PDIA5Q14554 519 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 TTMPQ5BVD1 217 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 C8orf74Q6P047 294 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 AMIGO3Q86WK7 504 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 RNF10Q8N5U6 811 aaKnown RBP14.05□□□□□ -0.16
SHMT1-205ENST00000395684 GJA10Q969M2 543 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 CAPS2Q9BXY5 557 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 RABEP2Q9H5N1 569 aa14.05□□□□□ -0.16
SHMT1-205ENST00000395684 GRIN2DO15399 1336 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 SPATA31A5Q5VU36 1347 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 SPATA31A7Q8IWB4 1347 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms