RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 FOXP1Q9H334 677 aaPredicted RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 ABHD10Q9NUJ1 306 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 SERTAD1Q9UHV2 236 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 CEP131Q9UPN4 1083 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 SAR1BQ9Y6B6 198 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 CAPN7Q9Y6W3 813 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 LRRC10BA6NIK2 292 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 CHUKO15111 745 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 POLR2DO15514 142 aaKnown RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 FMNL1O95466 1100 aaPredicted RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 EPB41P11171 864 aaKnown RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 GNGT1P63211 74 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 CKAP4Q07065 602 aaKnown RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 SSRP1Q08945 709 aaKnown RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 NEDD9Q14511 834 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 RASA3Q14644 834 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 TEPSINQ96N21 525 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 AIFM3Q96NN9 605 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 EHD4Q9H223 541 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 HAUS4Q9H6D7 363 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 FAM217BQ9NTX9 383 aaPredicted RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 FBXO2Q9UK22 296 aaPredicted RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 FAM184BQ9ULE4 1060 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 ATRNL1Q5VV63 1379 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 MEFVO15553 781 aaPredicted RBP12.37□□□□□ -0.43
CUX1-204ENST00000393824 CUL4BQ13620 913 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 ANGEL2Q5VTE6 544 aaKnown RBP12.37□□□□□ -0.43
CUX1-204ENST00000393824 LRCH2Q5VUJ6 765 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 ZNF662Q6ZS27 426 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.37□□□□□ -0.43
CUX1-204ENST00000393824 AENQ8WTP8 325 aaKnown RBP12.37□□□□□ -0.43
CUX1-204ENST00000393824 FAM212AQ96EL1 285 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 UBAC1Q9BSL1 405 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 MTA3Q9BTC8 594 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 SRPRBQ9Y5M8 271 aaKnown RBP12.37□□□□□ -0.43
CUX1-204ENST00000393824 POTECB2RU33 542 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 ACTN4O43707 911 aaKnown RBP12.37□□□□□ -0.43
CUX1-204ENST00000393824 ZEB2O60315 1214 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 ENTPD3O75355 529 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 GDF11O95390 407 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 MYBL2P10244 700 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 IFNAR1P17181 557 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 TRIM14Q14142 442 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 RUBCNQ92622 972 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 CEP95Q96GE4 821 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 GGA3Q9NZ52 723 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 PI4KBQ9UBF8 816 aa12.37□□□□□ -0.43
CUX1-204ENST00000393824 GOLGA8AA7E2F4 631 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 OPA1O60313 960 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 NPM3O75607 178 aaKnown RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 MMP1P03956 469 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 TSPY3P0CV98 308 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 TSPY8P0CW00 308 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 CALRP27797 417 aaKnown RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 RCAN1P53805 252 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 WTAPQ15007 396 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 OTUD6BQ8N6M0 293 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 GIMAP7Q8NHV1 300 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 FAM151AQ8WW52 585 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 ZKSCAN4Q969J2 545 aaPredicted RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 SLF1Q9BQI6 1058 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 EPN1Q9Y6I3 576 aaPredicted RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 H7C1D1 291 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 PREPLQ4J6C6 727 aaPredicted RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 SPECC1Q5M775 1068 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 NFXL1Q6ZNB6 911 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 ZNF444Q8N0Y2 327 aaPredicted RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 DEFB129Q9H1M3 183 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 DHX36Q9H2U1 1008 aaKnown RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 TMOD2Q9NZR1 351 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 MCM8Q9UJA3 840 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 REXO2Q9Y3B8 237 aaKnown RBP12.36□□□□□ -0.43
CUX1-204ENST00000393824 SH3BP1Q9Y3L3 701 aa12.36□□□□□ -0.43
CUX1-204ENST00000393824 SYNRGQ9UMZ2 1314 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 H0YHG0 523 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 MYO1FO00160 1098 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 KIAA0754O94854 1291 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 NDUFA10O95299 355 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 ATP1A1P05023 1023 aaKnown RBP12.35□□□□□ -0.43
CUX1-204ENST00000393824 POTEIP0CG38 1075 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 POTEJP0CG39 1038 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 PCP11498 1178 aaKnown RBP12.35□□□□□ -0.43
CUX1-204ENST00000393824 TROAPQ12815 778 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 WLSQ5T9L3 541 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 CCDC84Q86UT8 332 aaPredicted RBP12.35□□□□□ -0.43
CUX1-204ENST00000393824 CRACR2BQ8N4Y2 399 aaPredicted RBP12.35□□□□□ -0.43
CUX1-204ENST00000393824 PHKBQ93100 1093 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 MIEF2Q96C03 454 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 GDAP1L1Q96MZ0 367 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 PLCD4Q9BRC7 762 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 HDAC6Q9UBN7 1215 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 GUCA1BQ9UMX6 200 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 STX8Q9UNK0 236 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 MTMR7Q9Y216 660 aa12.35□□□□□ -0.43
CUX1-204ENST00000393824 TMCO5BA8MYB1 307 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 RNF225M0QZC1 329 aaPredicted RBP12.34□□□□□ -0.43
CUX1-204ENST00000393824 NDUFAB1O14561 156 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 GRIN3BO60391 1043 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 HLA-DOAP06340 250 aa12.34□□□□□ -0.43
CUX1-204ENST00000393824 ELF1P32519 619 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms