RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 GPR75-ASB3A0A0A6YYF3 556 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 GOLGA6L9A6NEM1 432 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 DDX11L8A8MPP1 907 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 MFSD5Q6N075 450 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 CHCHD4Q8N4Q1 142 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 C12orf50Q8NA57 414 aaPredicted RBP9.07□□□□□ -0.96
LIMS1-203ENST00000393310 AFAP1L1Q8TED9 768 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 STAG1Q8WVM7 1258 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 FAM167AQ96KS9 214 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 MRPL9Q9BYD2 267 aaKnown RBP9.07□□□□□ -0.96
LIMS1-203ENST00000393310 EVA1BQ9NVM1 165 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 ARGLU1Q9NWB6 273 aaPredicted RBP9.07□□□□□ -0.96
LIMS1-203ENST00000393310 CLDND1Q9NY35 253 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 DCXO43602 365 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 RB1P06400 928 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 PRPHP41219 470 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 GPM6BQ13491 265 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 TRIM60Q495X7 471 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 FBXO11Q86XK2 927 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 C10orf67Q8IYJ2 551 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 GJD3Q8N144 294 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 TLE6Q9H808 572 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 VAT1LQ9HCJ6 419 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 DONSONQ9NYP3 566 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 CREMQ03060 361 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 PDCD2Q16342 344 aaPredicted RBP9.06□□□□□ -0.96
LIMS1-203ENST00000393310 MAF1Q9H063 256 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 IGFLR1Q9H665 355 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 ECHDC1Q9NTX5 307 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 ABCB11O95342 1321 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 DSG3P32926 999 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 SLC20A2Q08357 652 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 TXLNBQ8N3L3 684 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 BORCS6Q96GS4 357 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 GMLQ99445 158 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 EHD4Q9H223 541 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 SCN4AP35499 1836 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 C17orf102A2RUQ5 167 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 RIOK3O14730 519 aaKnown RBP9.06□□□□□ -0.96
LIMS1-203ENST00000393310 ANO1Q5XXA6 986 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 TLK2Q86UE8 772 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 CDAN1Q8IWY9 1227 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 PBXIP1Q96AQ6 731 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 HAUS7Q99871 368 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 PRDM12Q9H4Q4 367 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 PAG1Q9NWQ8 432 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 SALL1Q9NSC2 1324 aa9.06□□□□□ -0.96
LIMS1-203ENST00000393310 FAM155AB1AL88 458 aaPredicted RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 VIMP08670 466 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 PHKA1P46020 1223 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 ITGA7Q13683 1181 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 Q3C1V9 767 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 RIOX2Q8IUF8 465 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 CDX2Q99626 313 aaPredicted RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 LMCD1Q9NZU5 365 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 PALD1Q9ULE6 856 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 USP18Q9UMW8 372 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 COMMD10Q9Y6G5 202 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 C5P01031 1676 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 XPOTO43592 962 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 TIMM10P62072 90 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 SEPT7Q16181 437 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 OTOP2Q7RTS6 562 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 TMC7Q7Z402 723 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 SPICE1Q8N0Z3 855 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 LRRC47Q8N1G4 583 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 CCDC148Q8NFR7 591 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 IL17RAQ96F46 866 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 RAB34Q9BZG1 259 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 NKX2-4Q9H2Z4 354 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 NOB1Q9ULX3 412 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 TIMP1P01033 207 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 HSPD1P10809 573 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 NASPP49321 788 aaPredicted RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 NFX1Q12986 1120 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 TAF2Q6P1X5 1199 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 AFG1LQ8WV93 481 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 FAM163AQ96GL9 167 aaPredicted RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 BOLA2Q9H3K6 86 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 OGDHLQ9ULD0 1010 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 CFBP00751 764 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 SELPP16109 830 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 MARCKSP29966 332 aaPredicted RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 PRDX5P30044 214 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 GTF2F1P35269 517 aaKnown RBP eCLIP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 PLCD1P51178 756 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 ACLYP53396 1101 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 CCL23P55773 120 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 LMBRD2Q68DH5 695 aaPredicted RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 GIMAP6Q6P9H5 292 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 SH3GL3Q99963 347 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 ADPGKQ9BRR6 497 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 SEMA6BQ9H3T3 888 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 DBR1Q9UK59 544 aaKnown RBP9.05□□□□□ -0.96
LIMS1-203ENST00000393310 LIMCH1Q9UPQ0 1083 aa9.05□□□□□ -0.96
LIMS1-203ENST00000393310 PRC1O43663 620 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 BCRP11274 1271 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 SFSWAPQ12872 951 aaKnown RBP9.04□□□□□ -0.96
LIMS1-203ENST00000393310 SEPT2Q15019 361 aa9.04□□□□□ -0.96
LIMS1-203ENST00000393310 SKOR2Q2VWA4 1001 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms