RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 R3HDMLQ9H3Y0 253 aa21.03■□□□□ 0.96
CLN3-206ENST00000360019 TTC12Q9H892 705 aaPredicted RBP21.03■□□□□ 0.96
CLN3-206ENST00000360019 PXMP2Q9NR77 195 aa21.03■□□□□ 0.96
CLN3-206ENST00000360019 CTAGE5O15320 804 aa21.02■□□□□ 0.96
CLN3-206ENST00000360019 MSH4O15457 936 aa21.02■□□□□ 0.96
CLN3-206ENST00000360019 EIF2AK2P19525 551 aaKnown RBP21.02■□□□□ 0.96
CLN3-206ENST00000360019 CEP55Q53EZ4 464 aa21.02■□□□□ 0.96
CLN3-206ENST00000360019 RGMBQ6NW40 437 aa21.02■□□□□ 0.96
CLN3-206ENST00000360019 TLL2Q9Y6L7 1015 aa21.02■□□□□ 0.96
CLN3-206ENST00000360019 TBX3O15119 743 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 ACTN4O43707 911 aaKnown RBP21.01■□□□□ 0.95
CLN3-206ENST00000360019 TMEM266Q2M3C6 531 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 PCNX4Q63HM2 1172 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 NCAPG2Q86XI2 1143 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 FUCA2Q9BTY2 467 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 FBXO40Q9UH90 709 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 SERTAD1Q9UHV2 236 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 TESPA1A2RU30 521 aaPredicted RBP21.01■□□□□ 0.95
CLN3-206ENST00000360019 POTEMA6NI47 508 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 MARCH6O60337 910 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 ERCC3P19447 782 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 MRPS9P82933 396 aaKnown RBP21.01■□□□□ 0.95
CLN3-206ENST00000360019 KARSQ15046 597 aaKnown RBP21.01■□□□□ 0.95
CLN3-206ENST00000360019 PGM5Q15124 567 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 SLFN12Q8IYM2 578 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 CNNM3Q8NE01 707 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 SMCR8Q8TEV9 937 aaPredicted RBP21.01■□□□□ 0.95
CLN3-206ENST00000360019 ERCC4Q92889 916 aaPredicted RBP21.01■□□□□ 0.95
CLN3-206ENST00000360019 DHX58Q96C10 678 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 PDCD2LQ9BRP1 358 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 CCSER1Q9C0I3 900 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 PCDHA12Q9UN75 941 aa21.01■□□□□ 0.95
CLN3-206ENST00000360019 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21■□□□□ 0.95
CLN3-206ENST00000360019 MEIS1O00470 390 aa21■□□□□ 0.95
CLN3-206ENST00000360019 TXLNAP40222 546 aa21■□□□□ 0.95
CLN3-206ENST00000360019 UBA7P41226 1012 aa21■□□□□ 0.95
CLN3-206ENST00000360019 ERVK-9P63128 1117 aa21■□□□□ 0.95
CLN3-206ENST00000360019 ERVK-24P63145 666 aa21■□□□□ 0.95
CLN3-206ENST00000360019 PDIA5Q14554 519 aa21■□□□□ 0.95
CLN3-206ENST00000360019 E2F4Q16254 413 aa21■□□□□ 0.95
CLN3-206ENST00000360019 GTF3C2Q8WUA4 911 aaPredicted RBP21■□□□□ 0.95
CLN3-206ENST00000360019 MMTAG2Q9BU76 263 aaKnown RBP21■□□□□ 0.95
CLN3-206ENST00000360019 LRWD1Q9UFC0 647 aa21■□□□□ 0.95
CLN3-206ENST00000360019 LCTP09848 1927 aa21■□□□□ 0.95
CLN3-206ENST00000360019 SLC25A27O95847 323 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 ITGB5P18084 799 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 ARHGEF16Q5VV41 709 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 PLA2G4DQ86XP0 818 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 ANKRD35Q8N283 1001 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 FAM20AQ96MK3 541 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 MXRA8Q9BRK3 442 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 FOXN1O15353 648 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 TOMM70O94826 608 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 SLC10A3P09131 477 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 SPIRE1Q08AE8 756 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 CABP7Q86V35 215 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 RAB34Q9BZG1 259 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 DISC1Q9NRI5 854 aa20.99■□□□□ 0.95
CLN3-206ENST00000360019 PFASO15067 1338 aa20.98■□□□□ 0.95
CLN3-206ENST00000360019 FSD2A1L4K1 749 aa20.98■□□□□ 0.95
CLN3-206ENST00000360019 SETQ01105 290 aaPredicted RBP20.98■□□□□ 0.95
CLN3-206ENST00000360019 ELOA2Q8IYF1 753 aaPredicted RBP20.98■□□□□ 0.95
CLN3-206ENST00000360019 UBIAD1Q9Y5Z9 338 aa20.98■□□□□ 0.95
CLN3-206ENST00000360019 SLFN14P0C7P3 912 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 ARP10275 920 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 COPB2P35606 906 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 MDM2Q00987 491 aaPredicted RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLN3-206ENST00000360019 IQUBQ8NA54 791 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 NSUN6Q8TEA1 469 aaKnown RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 ASTN1O14525 1302 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 FAM155AB1AL88 458 aaPredicted RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 IGF2BP3O00425 579 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLN3-206ENST00000360019 MYCLP12524 364 aaPredicted RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 CNTN2Q02246 1040 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 NAALADL2Q58DX5 795 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 PDXDC2PQ6P474 469 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 NIPA1Q7RTP0 329 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 GRAMD1CQ8IYS0 662 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 LRRC15Q8TF66 581 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 SLC5A5Q92911 643 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 PARK7Q99497 189 aaKnown RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 PYM1Q9BRP8 204 aaKnown RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 WDR11Q9BZH6 1224 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 PORCNQ9H237 461 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 TSPY26PQ9H489 355 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 KIAA1468Q9P260 1216 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 VAV3Q9UKW4 847 aa20.97■□□□□ 0.95
CLN3-206ENST00000360019 ABT1Q9ULW3 272 aaKnown RBP20.97■□□□□ 0.95
CLN3-206ENST00000360019 MANSC4A6NHS7 340 aaPredicted RBP20.96■□□□□ 0.95
CLN3-206ENST00000360019 NR3C2P08235 984 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 BCRP11274 1271 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 PNOCQ13519 176 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 ZRSR1Q15695 479 aaKnown RBP20.96■□□□□ 0.95
CLN3-206ENST00000360019 SH3RF1Q7Z6J0 888 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 VSIG10LQ86VR7 867 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 ANKRD13CQ8N6S4 541 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 GPRC5AQ8NFJ5 357 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 NUDT12Q9BQG2 462 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 JADE2Q9NQC1 790 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms