RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 MKRN1Q9UHC7 482 aaKnown RBP8.02□□□□□ -1.12
VPS13A-202ENST00000357409 PDE8BO95263 885 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 BMP15O95972 392 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 PFKFB1P16118 471 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 NLRP12P59046 1061 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 PPP6R3Q5H9R7 873 aaPredicted RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 GPR161Q8N6U8 529 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 DDX27Q96GQ7 796 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 DKC1O60832 514 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 PDE6CP51160 858 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 ATXN3P54252 364 aaPredicted RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 SETDB1Q15047 1291 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 EZH2Q15910 746 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 SYDE2Q5VT97 1194 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 MMTAG2Q9BU76 263 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 RABGAP1Q9Y3P9 1069 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 HEY1Q9Y5J3 304 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 TRAPPC8Q9Y2L5 1435 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 DCAF15Q66K64 600 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 RETREG2Q8NC44 543 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 NGRNQ9NPE2 291 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 MROH5Q6ZUA9 1318 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 CFLARO15519 480 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 DDHD2O94830 711 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 MECOMQ03112 1051 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 C2orf54Q08AI8 447 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 FAM133AQ8N9E0 248 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 NAPGQ99747 312 aaPredicted RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 PIH1D3Q9NQM4 214 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 PCSK1NQ9UHG2 260 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 KRIT1O00522 736 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 MOCS3O95396 460 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 HPS3Q969F9 1004 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 APOL5Q9BWW9 433 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 AMFRQ9UKV5 643 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L15C9J2P7 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L13C9JLJ4 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L11C9JVI0 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L18D6R9N7 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L22D6RA61 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L17D6RBQ6 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L19D6RCP7 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L20D6RJB6 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 TFRCP02786 760 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 EHHADHQ08426 723 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L24Q0WX57 530 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L6PQ6QN14 398 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 KRT25Q7Z3Z0 450 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 USP33Q8TEY7 942 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 HASPINQ8TF76 798 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 RNF139Q8WU17 664 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 NCAPGQ9BPX3 1015 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 BABAM1Q9NWV8 329 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 DPYSL4O14531 572 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 DDX53Q86TM3 631 aaKnown RBP8.02□□□□□ -1.13
VPS13A-202ENST00000357409 SPDL1Q96EA4 605 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 ATP8A2Q9NTI2 1148 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 SPTLC3Q9NUV7 552 aa8.02□□□□□ -1.13
VPS13A-202ENST00000357409 CUX1P39880 1505 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CRKP46108 304 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 IQCB1Q15051 598 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 TTLL6Q8N841 843 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 OSBP2Q969R2 916 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CACYBPQ9HB71 228 aaKnown RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 NSD2O96028 1365 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 LARGE1O95461 756 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CPB1P15086 417 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 ZKSCAN8Q15776 578 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 RNF207Q6ZRF8 634 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 SAMD7Q7Z3H4 446 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 C11orf74Q86VG3 221 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 RFWD2Q8NHY2 731 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CXorf38Q8TB03 319 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 POLR3AO14802 1390 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 SPECC1L-ADORA2AF8WAN1 911 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 ESRRBO95718 433 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 UBA6A0AVT1 1052 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 DENND3A2RUS2 1198 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 NOL3O60936 208 aaKnown RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CSDE1O75534 798 aaKnown RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 C11orf96Q7Z7L8 435 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CFAP61Q8NHU2 1237 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 FAM213AQ9BRX8 229 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 MAP3K15Q6ZN16 1313 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 MORC3Q14149 939 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 UBL4BQ8N7F7 174 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 NDUFAB1O14561 156 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 STAT2P52630 851 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 TNFAIP1Q13829 316 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 TTC7AQ9ULT0 858 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CC2D2AQ9P2K1 1620 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 GNGT2O14610 69 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 SGSM2O43147 1006 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 SYF2O95926 243 aaKnown RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 NCF2P19878 526 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 SARNPP82979 210 aaKnown RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 TCP11X2Q5H9J9 407 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CATSPER4Q7RTX7 472 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CEP120Q8N960 986 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms