RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 REM2Q8IYK8 340 aaPredicted RBP4.6□□□□□ -1.67
LIG4-201ENST00000356922 HAS1Q92839 578 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 USP28Q96RU2 1077 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 SRRDQ9UH36 339 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 TRIM17Q9Y577 477 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 PTCH2Q9Y6C5 1203 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 A0A0C4DFX4 3053 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 A0A087WWV3 80 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 STRNO43815 780 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 F13A1P00488 732 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 MTFR1Q15390 333 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 LY6KQ17RY6 165 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 USP49Q70CQ1 688 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 IL27Q8NEV9 243 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 FOXP1Q9H334 677 aaPredicted RBP4.6□□□□□ -1.67
LIG4-201ENST00000356922 PKD2L1Q9P0L9 805 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 CHD9Q3L8U1 2897 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 DOCK5Q9H7D0 1870 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 PLXNA1Q9UIW2 1896 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 CEP290O15078 2479 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 SLC15A5A6NIM6 579 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 HOXC6P09630 235 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 GNA11P29992 359 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 SREBF1P36956 1147 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 CCNA1P78396 465 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 CACNB2Q08289 660 aaPredicted RBP4.6□□□□□ -1.67
LIG4-201ENST00000356922 ITGB3BPQ13352 177 aaPredicted RBP4.6□□□□□ -1.67
LIG4-201ENST00000356922 ARHGEF16Q5VV41 709 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 MYSM1Q5VVJ2 828 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 ARMCX2Q7L311 632 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 POTEDQ86YR6 584 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 TNPO1Q92973 898 aaKnown RBP4.6□□□□□ -1.67
LIG4-201ENST00000356922 TINF2Q9BSI4 451 aa4.6□□□□□ -1.67
LIG4-201ENST00000356922 RBM27Q9P2N5 1060 aaKnown RBP4.6□□□□□ -1.67
LIG4-201ENST00000356922 FRMPD4Q14CM0 1322 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 DHX15O43143 795 aaKnown RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 CCNT1O60563 726 aaKnown RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 ZNF865P0CJ78 1059 aaPredicted RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 CCND3P30281 292 aaPredicted RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 MCM7P33993 719 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 ADCYAP1R1P41586 468 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 FCGRTP55899 365 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 PTPAQ15257 358 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 TKFCQ3LXA3 575 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 TPRNQ4KMQ1 711 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 OLFML2BQ68BL8 750 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 PPP1R18Q6NYC8 613 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 SEPT14Q6ZU15 432 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 MCF2L2Q86YR7 1114 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 ABRAQ8N0Z2 381 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 WASF1Q92558 559 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 NUDT12Q9BQG2 462 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 FBXO40Q9UH90 709 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 CNPY2Q9Y2B0 182 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 IVNS1ABPQ9Y6Y0 642 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 SPDYE3A6NKU9 549 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 PP2D1A8MPX8 630 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 hCG_1984214I3L0E3 225 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 MEIS1O00470 390 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 TRIM29Q14134 588 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 PRR16Q569H4 304 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 SPECC1Q5M775 1068 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 COL13A1Q5TAT6 717 aaPredicted RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 ZNF713Q8N859 430 aaPredicted RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 CCDC148Q8NFR7 591 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 NSUN6Q8TEA1 469 aaKnown RBP4.59□□□□□ -1.67
LIG4-201ENST00000356922 LRRC15Q8TF66 581 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 CLIC6Q96NY7 704 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 KCNH7Q9NS40 1196 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 KIAA1217Q5T5P2 1943 aa4.59□□□□□ -1.67
LIG4-201ENST00000356922 ZBTB39O15060 712 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 MSH4O15457 936 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 MARCKSP29966 332 aaPredicted RBP4.59□□□□□ -1.68
LIG4-201ENST00000356922 NONOQ15233 471 aaKnown RBP eCLIP4.59□□□□□ -1.68
LIG4-201ENST00000356922 SF3A1Q15459 793 aaKnown RBP4.59□□□□□ -1.68
LIG4-201ENST00000356922 CCDC144BQ3MJ40 725 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 CCDC62Q6P9F0 684 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 ETNPPLQ8TBG4 499 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 MORC4Q8TE76 937 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 GTF3C2Q8WUA4 911 aaPredicted RBP4.59□□□□□ -1.68
LIG4-201ENST00000356922 INPP4AQ96PE3 977 aaPredicted RBP4.59□□□□□ -1.68
LIG4-201ENST00000356922 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.59□□□□□ -1.68
LIG4-201ENST00000356922 UBIAD1Q9Y5Z9 338 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 PFASO15067 1338 aa4.59□□□□□ -1.68
LIG4-201ENST00000356922 CCDC194A0A1B0GVG4 234 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 MYADML2A6NDP7 307 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 EML1O00423 815 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 ADCY3O60266 1144 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CCNE2O96020 404 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CYP3A4P08684 503 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 SMPD1P17405 629 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 PTGDRQ13258 359 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 HSDL1Q3SXM5 330 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 CEP55Q53EZ4 464 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 PCNX4Q63HM2 1172 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 NEK8Q86SG6 692 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 DNERQ8NFT8 737 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 MBOAT7Q96N66 472 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 MTMR9Q96QG7 549 aa4.58□□□□□ -1.68
LIG4-201ENST00000356922 MXRA8Q9BRK3 442 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms