RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 CABLES1Q8TDN4 633 aa17.3■□□□□ 0.36
RTN3-205ENST00000356000 CASKIN2Q8WXE0 1202 aa17.3■□□□□ 0.36
RTN3-205ENST00000356000 VPS16Q9H269 839 aa17.3■□□□□ 0.36
RTN3-205ENST00000356000 VCXQ9H320 206 aa17.3■□□□□ 0.36
RTN3-205ENST00000356000 LUC7L2Q9Y383 392 aaKnown RBP17.3■□□□□ 0.36
RTN3-205ENST00000356000 ZSCAN5CA6NGD5 496 aaPredicted RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 ACTN4O43707 911 aaKnown RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 TACC1O75410 805 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 PDHA1P08559 390 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 KRT16P08779 473 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 LACTBP83111 547 aaPredicted RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 PABPC4Q13310 644 aaKnown RBP eCLIP17.29■□□□□ 0.363e-7■■□□□ 12.6
RTN3-205ENST00000356000 TTF1Q15361 905 aaPredicted RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.29■□□□□ 0.36
RTN3-205ENST00000356000 CNOT10Q9H9A5 744 aaKnown RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 ARHGEF3Q9NR81 526 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 USP54Q70EL1 1684 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 PPP1R3GB7ZBB8 358 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 PARP1P09874 1014 aaKnown RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 RFC5P40937 340 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 KIF5AQ12840 1032 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 TSR1Q2NL82 804 aaKnown RBP17.29■□□□□ 0.36
RTN3-205ENST00000356000 NFRKBQ6P4R8 1299 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 CHST3Q7LGC8 479 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 FAM114A1Q8IWE2 563 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 EHD2Q9NZN4 543 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 MAPK8IP1Q9UQF2 711 aa17.29■□□□□ 0.36
RTN3-205ENST00000356000 HSD17B3P37058 310 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 SPAG1Q07617 926 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 TEFQ10587 303 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 SFMBT2Q5VUG0 894 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 LINS1Q8NG48 757 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 TSPYL2Q9H2G4 693 aaPredicted RBP17.28■□□□□ 0.36
RTN3-205ENST00000356000 ECT2Q9H8V3 914 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 INCENPQ9NQS7 918 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 CTNNAL1Q9UBT7 734 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 SUN2Q9UH99 717 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 HIP1RO75146 1068 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 TAF7Q15545 349 aaPredicted RBP17.28■□□□□ 0.36
RTN3-205ENST00000356000 IMMTQ16891 758 aaKnown RBP17.28■□□□□ 0.36
RTN3-205ENST00000356000 FAM98CQ17RN3 349 aaKnown RBP17.28■□□□□ 0.36
RTN3-205ENST00000356000 GALNTL6Q49A17 601 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 FOXB2Q5VYV0 432 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 DLGAP2Q9P1A6 1054 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 CAPN11Q9UMQ6 739 aa17.28■□□□□ 0.36
RTN3-205ENST00000356000 NOVA2Q9UNW9 492 aaKnown RBP17.28■□□□□ 0.36
RTN3-205ENST00000356000 WNK3Q9BYP7 1800 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 UBOX5O94941 541 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 ACADSP16219 412 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 ZNF24P17028 368 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 STK11IPQ8N1F8 1099 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 OR2W6PQ8NHA6 318 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 COG3Q96JB2 828 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 ABCF3Q9NUQ8 709 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 TAB2Q9NYJ8 693 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 HPS5Q9UPZ3 1129 aa17.27■□□□□ 0.36
RTN3-205ENST00000356000 TPD52L2O43399 206 aaKnown RBP17.27■□□□□ 0.35
RTN3-205ENST00000356000 GSTA2P09210 222 aa17.27■□□□□ 0.35
RTN3-205ENST00000356000 EIF4BP23588 611 aaKnown RBP17.27■□□□□ 0.35
RTN3-205ENST00000356000 UAP1Q16222 522 aaPredicted RBP17.27■□□□□ 0.35
RTN3-205ENST00000356000 KLHL29Q96CT2 875 aa17.27■□□□□ 0.35
RTN3-205ENST00000356000 CAPN6Q9Y6Q1 641 aa17.27■□□□□ 0.35
RTN3-205ENST00000356000 PRC1O43663 620 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 MAGOHP61326 146 aaKnown RBP17.26■□□□□ 0.35
RTN3-205ENST00000356000 EIF1ADQ8N9N8 165 aaKnown RBP17.26■□□□□ 0.35
RTN3-205ENST00000356000 PHC3Q8NDX5 983 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 MAGOHBQ96A72 148 aaKnown RBP17.26■□□□□ 0.35
RTN3-205ENST00000356000 RAB17Q9H0T7 212 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 CTNND1O60716 968 aaKnown RBP17.26■□□□□ 0.35
RTN3-205ENST00000356000 CXCR5P32302 372 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 GBP1P32455 592 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 DSCC1Q9BVC3 393 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 SAMD15Q9P1V8 674 aa17.26■□□□□ 0.35
RTN3-205ENST00000356000 NUP188Q5SRE5 1749 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 CPLX1O14810 134 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 CHGBP05060 677 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 PTPREP23469 700 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 PEX5P50542 639 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 UBXN1Q04323 297 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 MTHFSDQ2M296 383 aaKnown RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 DZIP3Q86Y13 1208 aaKnown RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 AZIN2Q96A70 460 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 ACEP12821 1306 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 SMAPO00193 183 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 COPS2P61201 443 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 BNIP1Q12981 228 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 TCP11X2Q5H9J9 407 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 AKNAD1Q5T1N1 836 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 KRT40Q6A162 431 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 IRGCQ6NXR0 463 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 GBP7Q8N8V2 638 aaPredicted RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 FBF1Q8TES7 1133 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 IFT74Q96LB3 600 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 IWS1Q96ST2 819 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 NHEJ1Q9H9Q4 299 aaPredicted RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 GPHNQ9NQX3 736 aaPredicted RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 RNF14Q9UBS8 474 aa17.25■□□□□ 0.35
RTN3-205ENST00000356000 FBXO2Q9UK22 296 aaPredicted RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 IQSEC3Q9UPP2 1182 aaPredicted RBP17.25■□□□□ 0.35
RTN3-205ENST00000356000 A0A0G2JS52 829 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms