RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PRKCZQ05513 592 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 NSUN6Q8TEA1 469 aaKnown RBP10.43□□□□□ -0.74
USP4-202ENST00000351842 PDCD2LQ9BRP1 358 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 ASTN1O14525 1302 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 SOWAHBA6NEL2 793 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 ITGB5P18084 799 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 MTMR1Q13613 665 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 PGM5Q15124 567 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 LINC00301Q8NCQ3 95 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 TNFRSF25Q93038 417 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 TRIM47Q96LD4 638 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 CSRNP2Q9H175 543 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 ADAMTS5Q9UNA0 930 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 TRIM17Q9Y577 477 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 PLA2G6O60733 806 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 ATP9AO75110 1047 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 LIG1P18858 919 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 INHBEP58166 350 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 MRPS9P82933 396 aaKnown RBP10.42□□□□□ -0.74
USP4-202ENST00000351842 PDE4CQ08493 712 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 TRIM32Q13049 653 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 TRAF1Q13077 416 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 LY6KQ17RY6 165 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 MAEAQ7L5Y9 396 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 ZNF296Q8WUU4 475 aaPredicted RBP10.42□□□□□ -0.74
USP4-202ENST00000351842 ZNF577Q9BSK1 485 aa10.42□□□□□ -0.74
USP4-202ENST00000351842 CASP1P29466 404 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 KIF22Q14807 665 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 DTHD1Q6ZMT9 781 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 CHST13Q8NET6 341 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 NPLOC4Q8TAT6 608 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 DHX58Q96C10 678 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 SCAND2PQ9GZW5 306 aaPredicted RBP10.41□□□□□ -0.74
USP4-202ENST00000351842 FBXO40Q9UH90 709 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 GAS7O60861 476 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 SLC25A27O95847 323 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 MARK3P27448 753 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 KARSQ15046 597 aaKnown RBP10.41□□□□□ -0.74
USP4-202ENST00000351842 CEP55Q53EZ4 464 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 CYFIP1Q7L576 1253 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 CKAP2LQ8IYA6 745 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 GRAMD1CQ8IYS0 662 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 KCNH7Q9NS40 1196 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 PCDH10Q9P2E7 1040 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 PCDHA12Q9UN75 941 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 ESYT2A0FGR8 921 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 hCG_1984214I3L0E3 225 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 OR52Z1P0C646 297 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 AFMP43652 599 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 TM4SF4P48230 202 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 ALDH5A1P51649 535 aaPredicted RBP10.41□□□□□ -0.74
USP4-202ENST00000351842 LRCH2Q5VUJ6 765 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 GALNT17Q6IS24 598 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 PPP1R18Q6NYC8 613 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 C17orf99Q6UX52 265 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 ZNF713Q8N859 430 aaPredicted RBP10.41□□□□□ -0.74
USP4-202ENST00000351842 NUDT12Q9BQG2 462 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 ZHX3Q9H4I2 956 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 MROH8Q9H579 483 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 RGL1Q9NZL6 768 aa10.41□□□□□ -0.74
USP4-202ENST00000351842 TMEM150BA6NC51 233 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 M0R2N6 131 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 BACH1O14867 736 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 FOSP01100 380 aaPredicted RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 FDX1P10109 184 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 BCRP11274 1271 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 ADCYAP1R1P41586 468 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 LACTBP83111 547 aaPredicted RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 UTP14CQ5TAP6 766 aaKnown RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 ARMCX2Q7L311 632 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 RAET1EQ8TD07 263 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 EHMT1Q9H9B1 1298 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 ADD3Q9UEY8 706 aaKnown RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 MYH7BA7E2Y1 1941 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 GPR25O00155 361 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 IPO5O00410 1097 aaKnown RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 MSH4O15457 936 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 EDIL3O43854 480 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 UBA7P41226 1012 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 CLK2P49760 499 aaKnown RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 HSD17B4P51659 736 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 OAZ1P54368 228 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 AP3B2Q13367 1082 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 STXBP2Q15833 593 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 CCDC73Q6ZRK6 1079 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 KRI1Q8N9T8 703 aaKnown RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 SH3TC2Q8TF17 1288 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 SYMPKQ92797 1274 aaKnown RBP10.4□□□□□ -0.74
USP4-202ENST00000351842 DACT1Q9NYF0 836 aa10.4□□□□□ -0.74
USP4-202ENST00000351842 BIN1O00499 593 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 POLR2DO15514 142 aaKnown RBP10.39□□□□□ -0.75
USP4-202ENST00000351842 NR1I2O75469 434 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 CCND2P30279 289 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 SREBF1P36956 1147 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 NDUFA8P51970 172 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 CTTNQ14247 550 aaKnown RBP10.39□□□□□ -0.75
USP4-202ENST00000351842 SLC39A14Q15043 492 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 IL17AQ16552 155 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 TRIM50Q86XT4 487 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 TPH2Q8IWU9 490 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms