RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RCCD1A6NED2 376 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 MYMKA6NI61 221 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 LRRIQ3A6PVS8 624 aaPredicted RBP13.19□□□□□ -0.3
USP1-201ENST00000339950 SLC37A4O43826 429 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 GNGT1P63211 74 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 U2AF1L4Q8WU68 220 aaKnown RBP13.19□□□□□ -0.3
USP1-201ENST00000339950 CD209Q9NNX6 404 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 SARSP49591 514 aaKnown RBP13.19□□□□□ -0.3
USP1-201ENST00000339950 MRPL12P52815 198 aaKnown RBP13.19□□□□□ -0.3
USP1-201ENST00000339950 WHAMMP3Q1A5X7 153 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 ADSSL1Q8N142 457 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 BCAS4Q8TDM0 211 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 LCMT1Q9UIC8 334 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 NDUFAB1O14561 156 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 FGFR1OPO95684 399 aaKnown RBP13.19□□□□□ -0.3
USP1-201ENST00000339950 SERPINB2P05120 415 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 VAV2P52735 878 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 EHBP1Q8NDI1 1231 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 KIFC2Q96AC6 838 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 CAPN6Q9Y6Q1 641 aa13.19□□□□□ -0.3
USP1-201ENST00000339950 CACNA1FO60840 1977 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 EPHB6O15197 1021 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 VPS41P49754 854 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 PDCLQ13371 301 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 SLC9C1Q4G0N8 1177 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 SFMBT2Q5VUG0 894 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 ANKZF1Q9H8Y5 726 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 PCDHA13Q9Y5I0 950 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 TCP10L2B9ZVM9 353 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 NR2F2P24468 414 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 MYCT1Q8N699 235 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 DMGDHQ9UI17 866 aaKnown RBP13.18□□□□□ -0.3
USP1-201ENST00000339950 RASA1P20936 1047 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 RCSD1Q6JBY9 416 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 NOX5Q96PH1 765 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 PCIF1Q9H4Z3 704 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 MYO1AQ9UBC5 1043 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 PCDHAC2Q9Y5I4 1007 aa13.18□□□□□ -0.3
USP1-201ENST00000339950 PDXDC2PQ6P474 469 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 MIGA2Q7L4E1 593 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 CETN3O15182 167 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 FAM13AO94988 1023 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 TBX2Q13207 712 aaPredicted RBP13.17□□□□□ -0.3
USP1-201ENST00000339950 TRIM14Q14142 442 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 CCDC65Q8IXS2 484 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 IKZF4Q9H2S9 585 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 BARHL2Q9NY43 387 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 RRP15Q9Y3B9 282 aaKnown RBP13.17□□□□□ -0.3
USP1-201ENST00000339950 IVLP07476 585 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 COPB2P35606 906 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 CTTNQ14247 550 aaKnown RBP13.17□□□□□ -0.3
USP1-201ENST00000339950 DDX42Q86XP3 938 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP1-201ENST00000339950 TAB3Q8N5C8 712 aaPredicted RBP13.17□□□□□ -0.3
USP1-201ENST00000339950 CCDC51Q96ER9 411 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 SELENOOQ9BVL4 669 aa13.17□□□□□ -0.3
USP1-201ENST00000339950 DNAJC17Q9NVM6 304 aaKnown RBP13.17□□□□□ -0.3
USP1-201ENST00000339950 HARSP12081 509 aaKnown RBP13.16□□□□□ -0.3
USP1-201ENST00000339950 ZBED6P86452 979 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 ASIC2Q16515 512 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 CEP85LQ5SZL2 805 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 KCNK18Q7Z418 384 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 RGL1Q9NZL6 768 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 MAD2L2Q9UI95 211 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 COL5A2P05997 1499 aaPredicted RBP13.16□□□□□ -0.3
USP1-201ENST00000339950 STXBP3O00186 592 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 EBAG9O00559 213 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 HEXIM1O94992 359 aaKnown RBP13.16□□□□□ -0.3
USP1-201ENST00000339950 KCNJ6P48051 423 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 PRKG1Q13976 671 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 GJB7Q6PEY0 223 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 FBXO33Q7Z6M2 555 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 AMIGO3Q86WK7 504 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 DGKHQ86XP1 1220 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 BHMT2Q9H2M3 363 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 PALMO75781 387 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 ZRANB2O95218 330 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP1-201ENST00000339950 KRT14P02533 472 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 DAAM2Q86T65 1068 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 CUL5Q93034 780 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 SELENOSQ9BQE4 189 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 SERPINB13Q9UIV8 391 aa13.16□□□□□ -0.3
USP1-201ENST00000339950 MYO1CO00159 1063 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 PDE2AO00408 941 aaPredicted RBP13.15□□□□□ -0.3
USP1-201ENST00000339950 GFPT2O94808 682 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 EEF1GP26641 437 aaKnown RBP13.15□□□□□ -0.3
USP1-201ENST00000339950 ACTN2P35609 894 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 HERVK_113P62684 666 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 VWA3BQ502W6 1294 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 OR2W6PQ8NHA6 318 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 KCNQ5Q9NR82 932 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 MYBL2P10244 700 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 TRAPPC10P48553 1259 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 NFIAQ12857 509 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 BEND6Q5SZJ8 279 aaPredicted RBP13.15□□□□□ -0.3
USP1-201ENST00000339950 CDKAL1Q5VV42 579 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 SLFN13Q68D06 897 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 CCDC127Q96BQ5 260 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 ZNF512BQ96KM6 892 aaPredicted RBP13.15□□□□□ -0.3
USP1-201ENST00000339950 NALCNQ8IZF0 1738 aa13.15□□□□□ -0.3
USP1-201ENST00000339950 SEPT2Q15019 361 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms