RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TRERF1Q96PN7 1200 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 BLZF1Q9H2G9 400 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 KCNMB3Q9NPA1 279 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 DISC1Q9NRI5 854 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 TUBE1Q9UJT0 475 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 ZNF214Q9UL59 606 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 ADAMTS5Q9UNA0 930 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 CTDP1Q9Y5B0 961 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 IGLV3-22A0A075B6J6 115 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 CYP3A7-CYP3A51PA0A087WV96 503 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 A0A0G2JLL6 359 aaPredicted RBP4.67□□□□□ -1.66
MCF2-201ENST00000338585 MARCH6O60337 910 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 PLCG1P19174 1290 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 CYP3A7P24462 503 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 TXLNAP40222 546 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 STAT6P42226 847 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 PLS1Q14651 629 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 LDLRAD1Q5T700 205 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 NSMFQ6X4W1 530 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 ARMC9Q7Z3E5 817 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 PRRT2Q7Z6L0 340 aaPredicted RBP4.67□□□□□ -1.66
MCF2-201ENST00000338585 CABP7Q86V35 215 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 CEP57L1Q8IYX8 460 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 IQUBQ8NA54 791 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 ETNPPLQ8TBG4 499 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 SYTL5Q8TDW5 730 aaPredicted RBP4.67□□□□□ -1.66
MCF2-201ENST00000338585 CCSER1Q9C0I3 900 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 RNF146Q9NTX7 359 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 LRWD1Q9UFC0 647 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 USP25Q9UHP3 1055 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 MAN1B1Q9UKM7 699 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 MSH4O15457 936 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 CYP3A4P08684 503 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 CIITAP33076 1130 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 ZNF76P36508 570 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 SARSP49591 514 aaKnown RBP4.67□□□□□ -1.66
MCF2-201ENST00000338585 NLRP12P59046 1061 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 RPS6P62753 249 aaKnown RBP4.67□□□□□ -1.66
MCF2-201ENST00000338585 SPIRE1Q08AE8 756 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 DPYDQ12882 1025 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 MKRN3Q13064 507 aaKnown RBP4.67□□□□□ -1.66
MCF2-201ENST00000338585 GRB10Q13322 594 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 CUL4BQ13620 913 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 MOGSQ13724 837 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 IQCB1Q15051 598 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 ECM1Q16610 540 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 TMEM266Q2M3C6 531 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 Q4G0T1 1027 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 RRAGBQ5VZM2 374 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 MCTP2Q6DN12 878 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 MOXD1Q6UVY6 613 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 AK8Q96MA6 479 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 PNMA5Q96PV4 448 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 TAAR1Q96RJ0 339 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 R3HDMLQ9H3Y0 253 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 ANO10Q9NW15 660 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 BTBD7Q9P203 1132 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 PCDHA12Q9UN75 941 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 KCNH4Q9UQ05 1017 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 LOC285556D6RIA3 1793 aa4.67□□□□□ -1.66
MCF2-201ENST00000338585 ARP10275 920 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 ITGB5P18084 799 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 EIF2AK2P19525 551 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 GHRHRQ02643 423 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 PPIL2Q13356 520 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 BAATQ14032 418 aaPredicted RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 DHX8Q14562 1220 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 KANK3Q6NY19 840 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 RNF207Q6ZRF8 634 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 KCNK18Q7Z418 384 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 MCF2L2Q86YR7 1114 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 DHX40Q8IX18 779 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 ELOA2Q8IYF1 753 aaPredicted RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 SMYD4Q8IYR2 804 aaPredicted RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 AOPEPQ8N6M6 819 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 SPATA20Q8TB22 786 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 SNX29Q8TEQ0 813 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 SMARCE1Q969G3 411 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 NAP1L4Q99733 375 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 TEX13BQ9BXU2 312 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 ASCC2Q9H1I8 757 aaPredicted RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 RPTORQ8N122 1335 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 CXCL11O14625 94 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 CELF2O95319 508 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 FDX1P10109 184 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 MRPS9P82933 396 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 MORC3Q14149 939 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 PDIA5Q14554 519 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 CEP55Q53EZ4 464 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 NT5DC1Q5TFE4 455 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 NCAPH2Q6IBW4 605 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 LBX2Q6XYB7 198 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 PLA2G4DQ86XP0 818 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 PROCA1Q8NCQ7 364 aaPredicted RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 SLC10A4Q96EP9 437 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 PAGR1Q9BTK6 254 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 BLOC1S4Q9NUP1 217 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 HOXC10Q9NYD6 342 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 PKD2L1Q9P0L9 805 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 CCDC39Q9UFE4 941 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms