RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 REXO2Q9Y3B8 237 aaKnown RBP16.58■□□□□ 0.24
CLCNKA-201ENST00000331433 NDUFA10O95299 355 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 GCFC2P16383 781 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 TMEM179Q6ZVK1 233 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 P2RX7Q99572 595 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 GTPBP4Q9BZE4 634 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 TTYH3Q9C0H2 523 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 EPN1Q9Y6I3 576 aaPredicted RBP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 SSBP05455 408 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 USH1GQ495M9 461 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 TEX35Q5T0J7 233 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 POTEAQ6S8J7 498 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 PRMT6Q96LA8 375 aaPredicted RBP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 PCMTD1Q96MG8 357 aaPredicted RBP16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 ZSWIM4Q9H7M6 989 aa16.57■□□□□ 0.24
CLCNKA-201ENST00000331433 MEIS2O14770 477 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 NDUFB10O96000 172 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 GH2P01242 217 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 ERCC3P19447 782 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 IKQ13123 557 aaPredicted RBP16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 RRP1BQ14684 758 aaKnown RBP16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 C7orf43Q8WVR3 580 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 TRIM10Q9UDY6 481 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 YDJCA8MPS7 323 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 TSR1Q2NL82 804 aaKnown RBP16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 CNKSR1Q969H4 720 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 TFR2Q9UP52 801 aa16.56■□□□□ 0.24
CLCNKA-201ENST00000331433 POTEB3A0JP26 581 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 POTECB2RU33 542 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 E9PMD0 336 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 TFRCP02786 760 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 STAT3P40763 770 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 EHHADHQ08426 723 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 KIF4BQ2VIQ3 1234 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 POTEBQ6S5H4 581 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 GUF1Q8N442 669 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 DNAJC19Q96DA6 116 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 KIAA1024Q9UPX6 916 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 NPM3O75607 178 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 SPICE1Q8N0Z3 855 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 CSRNP1Q96S65 589 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 GLT8D2Q9H1C3 349 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 KCNMB3Q9NPA1 279 aa16.55■□□□□ 0.24
CLCNKA-201ENST00000331433 CTAGE9A4FU28 777 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 PPIP5K2O43314 1243 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 COASYQ13057 564 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 RSRC2Q7L4I2 434 aaKnown RBP16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 AMNQ9BXJ7 453 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 GUCA1BQ9UMX6 200 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 A0A1W2PRG0 241 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 C21orf2O43822 256 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 USP11P51784 963 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 ARHGAP4P98171 946 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 CACNB1Q02641 598 aaPredicted RBP16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 FKBP15Q5T1M5 1219 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 GMCL1P1Q8NEA9 526 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 ERGIC2Q96RQ1 377 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 NUP58Q9BVL2 599 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 FGFBP2Q9BYJ0 223 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 LRRC27Q9C0I9 530 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 TBC1D7Q9P0N9 293 aa16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 PUF60Q9UHX1 559 aaKnown RBP16.54■□□□□ 0.24
CLCNKA-201ENST00000331433 NPHP3-ACAD11A0A0J9YXS1 232 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 RXRBP28702 533 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 HERVK_113P62684 666 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 ZBED6P86452 979 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 RAD51AP2Q09MP3 1159 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 MEA1Q16626 185 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 SYDE2Q5VT97 1194 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 GMCL1Q96IK5 515 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 NAP1L4Q99733 375 aaKnown RBP16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 CDC23Q9UJX2 597 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 SMCHD1A6NHR9 2005 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 ATRNL1Q5VV63 1379 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 KDM3AQ9Y4C1 1321 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 VWA3BQ502W6 1294 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 PRR16Q569H4 304 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 HYIQ5T013 277 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 RBM26Q5T8P6 1007 aaKnown RBP16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 LRRC55Q6ZSA7 311 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 FBXO11Q86XK2 927 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 SMAP1Q8IYB5 467 aaPredicted RBP16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 RETREG2Q8NC44 543 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 NT5C3AQ9H0P0 336 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 NDST4Q9H3R1 872 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 PANK4Q9NVE7 773 aa16.53■□□□□ 0.24
CLCNKA-201ENST00000331433 CYP3A7-CYP3A51PA0A087WV96 503 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 TCP10L2B9ZVM9 353 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 EPHB6O15197 1021 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 ENTPD3O75355 529 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 MED24O75448 989 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 PLA2G4BP0C869 781 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 BMP3P12645 472 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 ZSCAN20P17040 1043 aaPredicted RBP16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 CYP3A7P24462 503 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 LRRC63Q05C16 580 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 AP3B2Q13367 1082 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 CC2D2BQ6DHV5 1058 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 CRYGNQ8WXF5 182 aa16.52■□□□□ 0.24
CLCNKA-201ENST00000331433 GOLGA1Q92805 767 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms