RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 hCG_1984214I3L0E3 225 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 SEMA3EO15041 775 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PFKFB2O60825 505 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 ATP6V0A4Q9HBG4 840 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 YTHDC2Q9H6S0 1430 aaKnown RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 KRT38O76015 456 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 TNNC2P02585 160 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 MT-ND3P03897 115 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PICALMQ13492 652 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 CYB5RLQ6IPT4 315 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 HESX1Q9UBX0 185 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PA2G4Q9UQ80 394 aaKnown RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 KRT75O95678 551 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 WDR75Q8IWA0 830 aaKnown RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 H3BRJ5 948 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 CAPN9O14815 690 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 C4BPBP20851 252 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 SEMA3FQ13275 785 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TRIM59Q8IWR1 403 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 PARP9Q8IXQ6 854 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 RNF169Q8NCN4 708 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TUBGCP2Q9BSJ2 902 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 USP40Q9NVE5 1235 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 PPP2R5CQ13362 524 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 E2F4Q16254 413 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 CADPS2Q86UW7 1296 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TLK1Q9UKI8 766 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 APOBEC2Q9Y235 224 aaKnown RBP15.41■□□□□ 0.06
COL7A1-201ENST00000328333 GOLGA8TH3BQL2 631 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 OATP04181 439 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 SLFN14P0C7P3 912 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 GOLGA8HP0CJ92 632 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TAC1P20366 129 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 FAM178BQ8IXR5 827 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 BRIP1Q9BX63 1249 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 V9GY48 417 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-201ENST00000328333 SBNO1A3KN83 1393 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 DDAH1O94760 285 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 SYT2Q8N9I0 419 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-201ENST00000328333 FOXP1Q9H334 677 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-201ENST00000328333 FAM83GA6ND36 823 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 ZBTB24O43167 697 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TXKP42681 527 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 COPB1P53618 953 aaKnown RBP15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TERB1Q8NA31 727 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 PPCSQ9HAB8 311 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 CAPN11Q9UMQ6 739 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 PPP6R2O75170 966 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 MFAP3P55082 362 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 DEFA1P59665 94 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 DEFA3P59666 94 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 ARHGAP44Q17R89 818 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 KIAA2013Q8IYS2 634 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 ATP8A2Q9NTI2 1148 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 TBC1D22AQ8WUA7 517 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 NLRC4Q9NPP4 1024 aa15.41■□□□□ 0.06
COL7A1-201ENST00000328333 GTPBP10A4D1E9 387 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 VAMP4O75379 141 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ANLNQ9NQW6 1124 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 DNAJC17Q9NVM6 304 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 B4E1Z4 1266 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 CNGA3Q16281 694 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ACAD11Q709F0 780 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ZNF212Q9UDV6 495 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 WARS2Q9UGM6 360 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 GRID2IPA4D2P6 1211 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 NVLO15381 856 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 PARP10Q53GL7 1025 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 VPS39Q96JC1 886 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ZBTB18Q99592 522 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 PITPNM3Q9BZ71 974 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 STX18Q9P2W9 335 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 EDC4Q6P2E9 1401 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 PAMP19021 973 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ZBBXA8MT70 800 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 KRT16P08779 473 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 S100A5P33763 92 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 CASP2P42575 452 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 YARSP54577 528 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 C1orf146Q5VVC0 180 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 BPIFA3Q9BQP9 254 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 KIF17Q9P2E2 1029 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 DDX5P17844 614 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 PTPREP23469 700 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 TMED2Q15363 201 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ANKRD27Q96NW4 1050 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 TRPC5Q9UL62 973 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 PTPN22Q9Y2R2 807 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 CARMIL3Q8ND23 1372 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 SBNO2Q9Y2G9 1366 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 GOLGA8MH3BSY2 632 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 DAB1O75553 588 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 TMCC1O94876 653 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 OR52Z1P0C646 297 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 CUL3Q13618 768 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 TRMT10CQ7L0Y3 403 aaKnown RBP15.4■□□□□ 0.06
COL7A1-201ENST00000328333 PANK4Q9NVE7 773 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 FANCLQ9NW38 375 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 ZFP69BQ9UJL9 534 aa15.4■□□□□ 0.06
COL7A1-201ENST00000328333 TAF1BQ53T94 588 aaPredicted RBP15.39■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms