RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TBC1D1Q86TI0 1168 aaPredicted RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 PDCD7Q8N8D1 485 aaKnown RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS39-201ENST00000318006 SPZ1Q9BXG8 430 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 LOC102724159A0A0B4J2E5 919 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 SERPINB2P05120 415 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 KCNQ4P56696 695 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 PWP2Q15269 919 aaKnown RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 PTPN21Q16825 1174 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 PTPROQ16827 1216 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ARHGAP44Q17R89 818 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 TMC4Q7Z404 712 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 GPBP1Q86WP2 473 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 PLA2G4DQ86XP0 818 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ZNF354CQ86Y25 554 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 TPH2Q8IWU9 490 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ZSWIM5Q9P217 1185 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ATP8A1Q9Y2Q0 1164 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 THRAP3Q9Y2W1 955 aaKnown RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 DAAM1Q9Y4D1 1078 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 NEXMIFQ5QGS0 1516 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 LIFRP42702 1097 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 EIF3BP55884 814 aaKnown RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 DHX9Q08211 1270 aaKnown RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 TNFAIP1Q13829 316 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 MAP3K7O43318 606 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ATF2P15336 505 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ZSCAN20P17040 1043 aaPredicted RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 HLFQ16534 295 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 PRR16Q569H4 304 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ADAT2Q7Z6V5 191 aaKnown RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 ARMC2Q8NEN0 867 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 CCDC17Q96LX7 622 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 TUBB6Q9BUF5 446 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 PGRMC1O00264 195 aaKnown RBP12.53□□□□□ -0.4
VPS39-201ENST00000318006 CREB3O43889 395 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 NDUFA10O95299 355 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 VPS41P49754 854 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 SLFN13Q68D06 897 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 ANKRD35Q8N283 1001 aa12.53□□□□□ -0.4
VPS39-201ENST00000318006 STK10O94804 968 aaKnown RBP12.52□□□□□ -0.4
VPS39-201ENST00000318006 CLEC4GQ6UXB4 293 aa12.52□□□□□ -0.4
VPS39-201ENST00000318006 FBXO11Q86XK2 927 aa12.52□□□□□ -0.4
VPS39-201ENST00000318006 SLFN12Q8IYM2 578 aa12.52□□□□□ -0.4
VPS39-201ENST00000318006 CNOT6LQ96LI5 555 aaKnown RBP12.52□□□□□ -0.4
VPS39-201ENST00000318006 ARMCX3Q9UH62 379 aaPredicted RBP12.52□□□□□ -0.4
VPS39-201ENST00000318006 PALLDQ8WX93 1383 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 SPECC1L-ADORA2AF8WAN1 911 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 MCAMP43121 646 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 NAA35Q5VZE5 725 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 TTC36A6NLP5 189 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 PPEF1O14829 653 aaPredicted RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 SART1O43290 800 aaKnown RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 DNAJC8O75937 253 aaPredicted RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 IFNB1P01574 187 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 BAG6P46379 1132 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 NBPF10Q6P3W6 841 aaKnown RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 VTI1AQ96AJ9 217 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 FTOQ9C0B1 505 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS39-201ENST00000318006 YIPF3Q9GZM5 350 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 OSBPL5Q9H0X9 879 aaPredicted RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 DDX25Q9UHL0 483 aaKnown RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 MAN1B1Q9UKM7 699 aa12.52□□□□□ -0.41
VPS39-201ENST00000318006 BZW2Q9Y6E2 419 aaKnown RBP12.52□□□□□ -0.41
VPS39-201ENST00000318006 ZBTB22O15209 634 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 RESTQ13127 1097 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 CCDC93Q567U6 631 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 GPATCH4Q5T3I0 446 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 QTRT2Q9H974 415 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 NOP56O00567 594 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 RNF8O76064 485 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 MMP1P03956 469 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 NLRP7Q8WX94 980 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 CENPKQ9BS16 269 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 BSDC1Q9NW68 430 aaPredicted RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 MRPL11Q9Y3B7 192 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 PCDHA1Q9Y5I3 950 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 ARHGEF40Q8TER5 1519 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 LAD1O00515 517 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 ATP1A3P13637 1013 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 ASPRV1Q53RT3 343 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 GABPB2Q8TAK5 448 aaPredicted RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 ANKRD7Q92527 254 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 STRBPQ96SI9 672 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 PFDN4Q9NQP4 134 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 PCDHA4Q9UN74 947 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 PCDHB13Q9Y5F0 798 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 MGEA5O60502 916 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 ARHGAP4P98171 946 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 BIRC2Q13490 618 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 FAM182BQ5T319 152 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 TMCO4Q5TGY1 634 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 NLRX1Q86UT6 975 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 MAGOHBQ96A72 148 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 MAGEF1Q9HAY2 307 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 SAMSN1Q9NSI8 373 aaKnown RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 ANGPTL2Q9UKU9 493 aa12.51□□□□□ -0.41
VPS39-201ENST00000318006 ZBTB12Q9Y330 459 aaPredicted RBP12.51□□□□□ -0.41
VPS39-201ENST00000318006 SOS2Q07890 1332 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms