RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TINF2Q9BSI4 451 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 WDR11Q9BZH6 1224 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 PDGFCQ9NRA1 345 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 ADCY3O60266 1144 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 SNAI1O95863 264 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-201ENST00000311487 SH3TC2Q8TF17 1288 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 SLC5A4Q9NY91 659 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 MCM4P33991 863 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 MCM7P33993 719 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 PRR16Q569H4 304 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 VSIG10LQ86VR7 867 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 FAM177A1Q8N128 213 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-201ENST00000311487 TFIP11Q9UBB9 837 aaKnown RBP20.68■□□□□ 0.9
HMGA1-201ENST00000311487 PCDHB6Q9Y5E3 794 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 MRVI1Q9Y6F6 885 aa20.68■□□□□ 0.9
HMGA1-201ENST00000311487 RGS20O76081 388 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 HOXC6P09630 235 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 ITGB5P18084 799 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 CCND2P30279 289 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 NEK8Q86SG6 692 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 SAMD3Q8N6K7 520 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 CRYGNQ8WXF5 182 aa20.67■□□□□ 0.9
HMGA1-201ENST00000311487 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.67■□□□□ 0.9
HMGA1-201ENST00000311487 SLC37A4O43826 429 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 STXBP2Q15833 593 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 PCNX4Q63HM2 1172 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 BCAS3Q9H6U6 928 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 ZHX1Q9UKY1 873 aaPredicted RBP20.66■□□□□ 0.9
HMGA1-201ENST00000311487 MYSM1Q5VVJ2 828 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 ANO1Q5XXA6 986 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 TNPO1Q92973 898 aaKnown RBP20.66■□□□□ 0.9
HMGA1-201ENST00000311487 LENG1Q96BZ8 264 aaPredicted RBP20.66■□□□□ 0.9
HMGA1-201ENST00000311487 EHMT1Q9H9B1 1298 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 PTPN22Q9Y2R2 807 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 FRMPD4Q14CM0 1322 aa20.66■□□□□ 0.9
HMGA1-201ENST00000311487 ASB14A6NK59 587 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 EDNRBP24530 442 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 ARHGEF6Q15052 776 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 GJC2Q5T442 439 aaPredicted RBP20.65■□□□□ 0.9
HMGA1-201ENST00000311487 IWS1Q96ST2 819 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 DIS3Q9Y2L1 958 aaKnown RBP20.65■□□□□ 0.9
HMGA1-201ENST00000311487 ARP10275 920 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 XRCC5P13010 732 aaKnown RBP20.65■□□□□ 0.9
HMGA1-201ENST00000311487 DNM1Q05193 864 aaKnown RBP20.65■□□□□ 0.9
HMGA1-201ENST00000311487 TPRNQ4KMQ1 711 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 TTC38Q5R3I4 469 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 CLIC4Q9Y696 253 aa20.65■□□□□ 0.9
HMGA1-201ENST00000311487 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.64■□□□□ 0.89
HMGA1-201ENST00000311487 GNRH1P01148 92 aa20.64■□□□□ 0.89
HMGA1-201ENST00000311487 CNGA1P29973 690 aa20.64■□□□□ 0.89
HMGA1-201ENST00000311487 MAMDC4Q6UXC1 1216 aa20.64■□□□□ 0.89
HMGA1-201ENST00000311487 BRAPQ7Z569 592 aa20.64■□□□□ 0.89
HMGA1-201ENST00000311487 POTEDQ86YR6 584 aa20.64■□□□□ 0.89
HMGA1-201ENST00000311487 TRPV1Q8NER1 839 aa20.64■□□□□ 0.89
HMGA1-201ENST00000311487 DDX25Q9UHL0 483 aaKnown RBP20.64■□□□□ 0.89
HMGA1-201ENST00000311487 ZNF236Q9UL36 1845 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 EIF3JO75822 258 aaKnown RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 NCLP19338 710 aaKnown RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ADCYAP1R1P41586 468 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 NUCB2P80303 420 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 CACNB2Q08289 660 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 LY6KQ17RY6 165 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 CEP55Q53EZ4 464 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 MXRA8Q9BRK3 442 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ZSCAN16Q9H4T2 348 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 CNPY2Q9Y2B0 182 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 IGLV3-22A0A075B6J6 115 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ATP9AO75110 1047 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ARIH2O95376 493 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 CCND3P30281 292 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 GRK4P32298 578 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 USP11P51784 963 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 SP2Q02086 613 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 MTMR1Q13613 665 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ACVR2BQ13705 512 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 OLFML2BQ68BL8 750 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 MCTP2Q6DN12 878 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 CTU1Q7Z7A3 348 aaKnown RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ZNF467Q7Z7K2 595 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 PLA2G4DQ86XP0 818 aa20.63■□□□□ 0.89
HMGA1-201ENST00000311487 NOL7Q9UMY1 257 aaKnown RBP20.63■□□□□ 0.89
HMGA1-201ENST00000311487 ADCY6O43306 1168 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 CYP3A4P08684 503 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 PRKAR2AP13861 404 aaKnown RBP20.62■□□□□ 0.89
HMGA1-201ENST00000311487 SEMA3FQ13275 785 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 IRF5Q13568 498 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 COPS5Q92905 334 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 LENG9Q96B70 501 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 USP28Q96RU2 1077 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 MAF1Q9H063 256 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 KATNBL1Q9H079 304 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 TMEM60Q9H2L4 133 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 KCNH7Q9NS40 1196 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 TELO2Q9Y4R8 837 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 UBIAD1Q9Y5Z9 338 aa20.62■□□□□ 0.89
HMGA1-201ENST00000311487 DDX39AO00148 427 aaKnown RBP20.61■□□□□ 0.89
HMGA1-201ENST00000311487 SP4Q02446 784 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 GSE1Q14687 1217 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 SF3A1Q15459 793 aaKnown RBP20.61■□□□□ 0.89
HMGA1-201ENST00000311487 CCDC144BQ3MJ40 725 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms