RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.37□□□□□ -1.71
USH2A-201ENST00000307340 BBOX1O75936 387 aa4.37□□□□□ -1.71
USH2A-201ENST00000307340 RAPGEF3O95398 923 aa4.37□□□□□ -1.71
USH2A-201ENST00000307340 GSTA2P09210 222 aa4.37□□□□□ -1.71
USH2A-201ENST00000307340 DHX34Q14147 1143 aaKnown RBP4.37□□□□□ -1.71
USH2A-201ENST00000307340 MAPRE3Q9UPY8 281 aa4.37□□□□□ -1.71
USH2A-201ENST00000307340 P4HA2O15460 535 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 GCP02774 474 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CASP14P31944 242 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 IL13P35225 146 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 AASDHQ4L235 1098 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 TMCO4Q5TGY1 634 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KRT28Q7Z3Y7 464 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SETD3Q86TU7 594 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 CCNJLQ8IV13 435 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 NME8Q8N427 588 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 FAXDC2Q96IV6 333 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 YIPF3Q9GZM5 350 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SNX25Q9H3E2 840 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 STOML1Q9UBI4 398 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 RPL26L1Q9UNX3 145 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 KDM6AO15550 1401 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 GNAT1P11488 350 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KRT15P19012 456 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CCNA1P78396 465 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PRPSAP1Q14558 356 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PHC3Q8NDX5 983 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 FAM20AQ96MK3 541 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 UIMC1Q96RL1 719 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZNF212Q9UDV6 495 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PALLDQ8WX93 1383 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 LRRD1A4D1F6 860 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 MCM6Q14566 821 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CCT6BQ92526 530 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CYP26B1Q9NR63 512 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PCDHB8Q9UN66 801 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KLC3Q6P597 504 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 OSCP1Q8WVF1 389 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ADPGKQ9BRR6 497 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PGRMC1O00264 195 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 SLC12A2P55011 1212 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SFMBT2Q5VUG0 894 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SH3TC2Q8TF17 1288 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.36□□□□□ -1.71
USH2A-201ENST00000307340 FBXO40Q9UH90 709 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 TBX3O15119 743 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ASAP2O43150 1006 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ATP2B4P23634 1241 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 USP11P51784 963 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KRBA2Q6ZNG9 492 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 TRAPPC11Q7Z392 1133 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 TACC3Q9Y6A5 838 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 DTNBO60941 627 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 HPDP32754 393 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 MAP2K2P36507 400 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KPNB1Q14974 876 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 MYSM1Q5VVJ2 828 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZHX3Q9H4I2 956 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SSU72P8A0A1W2PR75 194 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 MINDY4BA8MYZ0 360 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 RIOK3O14730 519 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 RGS16O15492 202 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 CCNT1O60563 726 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 TTKP33981 857 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 RMDN1Q96DB5 314 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 FAM167AQ96KS9 214 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SPTLC3Q9NUV7 552 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SLC8A2Q9UPR5 921 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 GTPBP6O43824 516 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 CCT6AP40227 531 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 PEX26Q7Z412 305 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 MICALL1Q8N3F8 863 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CDC23Q9UJX2 597 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 AP3M1Q9Y2T2 418 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 IFNAR1P17181 557 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 NACC1Q96RE7 527 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 HERC5Q9UII4 1024 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 SMG5Q9UPR3 1016 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 CDHR2Q9BYE9 1310 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 MYH7BA7E2Y1 1941 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 IQANK1A0A1B0GTG1 560 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PCCAP05165 728 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZNF75DP51815 510 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 IRX5P78411 483 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZBTB8OSQ8IWT0 167 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CEP44Q9C0F1 390 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 AZI2Q9H6S1 392 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 C1orf112Q9NSG2 853 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 BSDC1Q9NW68 430 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 TPX2Q9ULW0 747 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 PTPDC1A2A3K4 754 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CCDC22O60826 627 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SLC27A3Q5K4L6 730 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZNF569Q5MCW4 686 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 BEND3Q5T5X7 828 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 MCPH1Q8NEM0 835 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SLITRK6Q9H5Y7 841 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PLEKHA5Q9HAU0 1116 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SORCS3Q9UPU3 1222 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 A0A1W2PQJ5 194 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms