RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 DBNDD2Q9BQY9 259 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 PPP2R2CQ9Y2T4 447 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 BNIP3LO60238 219 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 PABPC4Q13310 644 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 GRAMD1BQ3KR37 738 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 NCAPG2Q86XI2 1143 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 ST13P4Q8IZP2 240 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 TMCO5AQ8N6Q1 288 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 CEP70Q8NHQ1 597 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 SUN2Q9UH99 717 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 SNX14Q9Y5W7 946 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 ZNF233A6NK53 670 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 MCF2P10911 925 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 ARPP19P56211 112 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 BASP1P80723 227 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 MYL7Q01449 175 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 CAPRIN1Q14444 709 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 MTHFSDQ2M296 383 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 FAM133BQ5BKY9 247 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 HABP4Q5JVS0 413 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 FBXO31Q5XUX0 539 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 KLC3Q6P597 504 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 C16orf87Q6PH81 154 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 ZC3H15Q8WU90 426 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 CENPKQ9BS16 269 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 INTUQ9ULD6 942 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 TAF5LO75529 589 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 WBP4O75554 376 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 CCDC85BQ15834 202 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 KIF19Q2TAC6 998 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 TRIM11Q96F44 468 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 ANKRD36BP1Q96IX9 119 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 NT5C1BQ96P26 610 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 YY1AP1Q9H869 796 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 POLR3AO14802 1390 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 PPARGP37231 505 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 PMS1P54277 932 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 TNFAIP1Q13829 316 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 SLC9A5Q14940 896 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 DARS2Q6PI48 645 aaKnown RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 MCF2L2Q86YR7 1114 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 EXT2Q93063 718 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 PHACTR3Q96KR7 559 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 MOSPD1Q9UJG1 213 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 DUOX2Q9NRD8 1548 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 MAPK4P31152 587 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 HACD3Q9P035 362 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 ABCA5Q8WWZ7 1642 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 PCYT1AP49585 367 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 NEK2P51955 445 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 DEUP1Q05D60 604 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 OR9Q1Q8NGQ5 310 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 N4BP2L2Q92802 583 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-201ENST00000302528 USP40Q9NVE5 1235 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 INPP5FQ9Y2H2 1132 aa11.24□□□□□ -0.61
CLIP1-201ENST00000302528 KRT1P04264 644 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 DYNLT1P63172 113 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 SKOR1P84550 965 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 EXOC3L4Q17RC7 722 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 TEKT4Q8WW24 435 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 NAF1Q96HR8 494 aaKnown RBP11.23□□□□□ -0.61
CLIP1-201ENST00000302528 BCL2L12Q9HB09 334 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 PDE11AQ9HCR9 933 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 PRKAG2Q9UGJ0 569 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 PCDH11XQ9BZA7 1347 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 PCDH11YQ9BZA8 1340 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 ESRRAP11474 423 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-201ENST00000302528 KCNA4P22459 653 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 SGO2Q562F6 1265 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 CDC37L1Q7L3B6 337 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 ARMC9Q7Z3E5 817 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 SPATA5Q8NB90 893 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 DEPDC1BQ8WUY9 529 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 LPIN2Q92539 896 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 DAAM1Q9Y4D1 1078 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 SNX5Q9Y5X3 404 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 SYCP2Q9BX26 1530 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 GOLGA8SH3BPF8 625 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 NFKBIAP25963 317 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 RASSF7Q02833 373 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 C1orf228Q6PIY5 440 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 PLA2G4DQ86XP0 818 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 BLIDQ8IZY5 108 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 TAGAPQ8N103 731 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 ANKRD13CQ8N6S4 541 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 TBC1D22AQ8WUA7 517 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 GJA10Q969M2 543 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 MRFAP1L1Q96HT8 127 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 ING2Q9H160 280 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 ECEL1O95672 775 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 CFAP36Q96G28 342 aa11.23□□□□□ -0.61
CLIP1-201ENST00000302528 HNRNPDLO14979 420 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ANP32DO95626 131 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 TEX9Q8N6V9 391 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 TRIM45Q9H8W5 580 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 SLC39A2Q9NP94 309 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ARPP21Q9UBL0 812 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 DDX25Q9UHL0 483 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 COPG1Q9Y678 874 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 SLC4A7Q9Y6M7 1214 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms