RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KRT222Q8N1A0 295 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 IDI2Q9BXS1 227 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 TRIM34Q9BYJ4 488 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 HERVK_113P62684 666 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 P2RX7Q99572 595 aaKnown RBP22.36■■□□□ 1.17
VPS53-201ENST00000291074 TDRD3Q9H7E2 651 aaKnown RBP22.36■■□□□ 1.17
VPS53-201ENST00000291074 KANSL2Q9H9L4 492 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 CDC23Q9UJX2 597 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 GUCA1BQ9UMX6 200 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 FHOD1Q9Y613 1164 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 SSBP05455 408 aaKnown RBP eCLIP22.36■■□□□ 1.17
VPS53-201ENST00000291074 JAG1P78504 1218 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 MKL1Q969V6 931 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 ST7Q9NRC1 585 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 ARGLU1Q9NWB6 273 aaPredicted RBP22.36■■□□□ 1.17
VPS53-201ENST00000291074 NYAP2Q9P242 653 aa22.36■■□□□ 1.17
VPS53-201ENST00000291074 H0YIN7 160 aa22.35■■□□□ 1.17
VPS53-201ENST00000291074 TSR1Q2NL82 804 aaKnown RBP22.35■■□□□ 1.17
VPS53-201ENST00000291074 GOLGA1Q92805 767 aa22.35■■□□□ 1.17
VPS53-201ENST00000291074 ANO3Q9BYT9 981 aa22.35■■□□□ 1.17
VPS53-201ENST00000291074 TMCO3Q6UWJ1 677 aa22.35■■□□□ 1.17
VPS53-201ENST00000291074 DCAF4Q8WV16 495 aa22.35■■□□□ 1.17
VPS53-201ENST00000291074 E9PMD0 336 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 CHMP4BP1P59074 171 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 EHHADHQ08426 723 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 SRGAP1Q7Z6B7 1085 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 GUF1Q8N442 669 aaKnown RBP22.34■■□□□ 1.17
VPS53-201ENST00000291074 GPR161Q8N6U8 529 aaKnown RBP22.34■■□□□ 1.17
VPS53-201ENST00000291074 DNAJC19Q96DA6 116 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 NAPGQ99747 312 aaPredicted RBP22.34■■□□□ 1.17
VPS53-201ENST00000291074 GTPBP4Q9BZE4 634 aaKnown RBP22.34■■□□□ 1.17
VPS53-201ENST00000291074 ZRANB2O95218 330 aaKnown RBP eCLIP22.34■■□□□ 1.17
VPS53-201ENST00000291074 PNMA6AP0CW24 399 aaPredicted RBP22.34■■□□□ 1.17
VPS53-201ENST00000291074 GCFC2P16383 781 aaKnown RBP22.34■■□□□ 1.17
VPS53-201ENST00000291074 STAT3P40763 770 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 MEA1Q16626 185 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 TATDN1Q6P1N9 297 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 FLAD1Q8NFF5 587 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 FGFBP2Q9BYJ0 223 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 SMCHD1A6NHR9 2005 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 POTEB3A0JP26 581 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 POTECB2RU33 542 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 F5H6K3 240 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 KLRC3Q07444 240 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 COASYQ13057 564 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 USH1GQ495M9 461 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 POTEBQ6S5H4 581 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 ERGIC2Q96RQ1 377 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 PARD6BQ9BYG5 372 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 TBC1D7Q9P0N9 293 aa22.34■■□□□ 1.17
VPS53-201ENST00000291074 MEIS2O14770 477 aa22.33■■□□□ 1.17
VPS53-201ENST00000291074 EPHB6O15197 1021 aa22.33■■□□□ 1.17
VPS53-201ENST00000291074 CACNB1Q02641 598 aaPredicted RBP22.33■■□□□ 1.17
VPS53-201ENST00000291074 FKBP15Q5T1M5 1219 aa22.33■■□□□ 1.17
VPS53-201ENST00000291074 GPIHBP1Q8IV16 184 aa22.33■■□□□ 1.17
VPS53-201ENST00000291074 RABGGTAQ92696 567 aa22.33■■□□□ 1.17
VPS53-201ENST00000291074 KIAA1024Q9UPX6 916 aa22.33■■□□□ 1.17
VPS53-201ENST00000291074 ZBED6P86452 979 aa22.33■■□□□ 1.16
VPS53-201ENST00000291074 RRP1BQ14684 758 aaKnown RBP22.33■■□□□ 1.16
VPS53-201ENST00000291074 BMS1Q14692 1282 aaKnown RBP22.33■■□□□ 1.16
VPS53-201ENST00000291074 ABCB5Q2M3G0 1257 aa22.33■■□□□ 1.16
VPS53-201ENST00000291074 VWA3BQ502W6 1294 aa22.33■■□□□ 1.16
VPS53-201ENST00000291074 NUP58Q9BVL2 599 aa22.33■■□□□ 1.16
VPS53-201ENST00000291074 MRIQ9BWK5 157 aa22.33■■□□□ 1.16
VPS53-201ENST00000291074 NPHP3-ACAD11A0A0J9YXS1 232 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 NDUFB10O96000 172 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 HDLBPQ00341 1268 aaKnown RBP22.32■■□□□ 1.16
VPS53-201ENST00000291074 RAD51AP2Q09MP3 1159 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 IKQ13123 557 aaPredicted RBP22.32■■□□□ 1.16
VPS53-201ENST00000291074 LRRC55Q6ZSA7 311 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 TMEM179Q6ZVK1 233 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 NDST4Q9H3R1 872 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 STYK1Q6J9G0 422 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 RETREG2Q8NC44 543 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 NHEJ1Q9H9Q4 299 aaPredicted RBP22.32■■□□□ 1.16
VPS53-201ENST00000291074 KCNMB3Q9NPA1 279 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 FAM207AQ9NSI2 230 aaPredicted RBP22.32■■□□□ 1.16
VPS53-201ENST00000291074 SERPINA10Q9UK55 444 aa22.32■■□□□ 1.16
VPS53-201ENST00000291074 RCCD1A6NED2 376 aa22.31■■□□□ 1.16
VPS53-201ENST00000291074 GH2P01242 217 aa22.31■■□□□ 1.16
VPS53-201ENST00000291074 FKBP1AP62942 108 aaKnown RBP22.31■■□□□ 1.16
VPS53-201ENST00000291074 PANK4Q9NVE7 773 aa22.31■■□□□ 1.16
VPS53-201ENST00000291074 PLEKP08567 350 aaPredicted RBP22.31■■□□□ 1.16
VPS53-201ENST00000291074 CCDC122Q5T0U0 273 aa22.31■■□□□ 1.16
VPS53-201ENST00000291074 PRMT6Q96LA8 375 aaPredicted RBP22.31■■□□□ 1.16
VPS53-201ENST00000291074 MYO1AQ9UBC5 1043 aa22.31■■□□□ 1.16
VPS53-201ENST00000291074 SIK3Q9Y2K2 1263 aa22.31■■□□□ 1.16
VPS53-201ENST00000291074 ENC1O14682 589 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 CYP27A1Q02318 531 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 DMTNQ08495 405 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 ZNHIT6Q9NWK9 470 aaKnown RBP22.3■■□□□ 1.16
VPS53-201ENST00000291074 MED24O75448 989 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 LRRC63Q05C16 580 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 MAN2A1Q16706 1144 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 HYIQ5T013 277 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 CC2D1AQ6P1N0 951 aaPredicted RBP22.3■■□□□ 1.16
VPS53-201ENST00000291074 KIAA1328Q86T90 577 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 SPICE1Q8N0Z3 855 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 CCDC155Q8N6L0 562 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 CEP112Q8N8E3 955 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms