RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CC2D2BQ6DHV5 1058 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 L2HGDHQ9H9P8 463 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 KBTBD4Q9NVX7 518 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 TBC1D7Q9P0N9 293 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 CDC23Q9UJX2 597 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 MYH2Q9UKX2 1941 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 SLC35F6Q8N357 371 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 FAM207AQ9NSI2 230 aaPredicted RBP18.04■□□□□ 0.48
CTCF-201ENST00000264010 KIAA1024Q9UPX6 916 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 A0A1W2PQC6 194 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 CETN3O15182 167 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 ECE2O60344 883 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 GDF11O95390 407 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 TUBBP07437 444 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 EEF2P13639 858 aaKnown RBP18.04■□□□□ 0.48
CTCF-201ENST00000264010 SEPT2Q15019 361 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 DLGAP5Q15398 846 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 ENOX2Q16206 610 aaKnown RBP18.04■□□□□ 0.48
CTCF-201ENST00000264010 FBXO38Q6PIJ6 1188 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 DYDC1Q8WWB3 177 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 SH2D4AQ9H788 454 aa18.04■□□□□ 0.48
CTCF-201ENST00000264010 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.04■□□□□ 0.484e-19■■■□□ 16.9
CTCF-201ENST00000264010 OAS2P29728 719 aaKnown RBP18.03■□□□□ 0.48
CTCF-201ENST00000264010 FXR1P51114 621 aaKnown RBP eCLIP18.03■□□□□ 0.48
CTCF-201ENST00000264010 GYS2P54840 703 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 NAA25Q14CX7 972 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 IL17AQ16552 155 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 MAP9Q49MG5 647 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 ZNF772Q68DY9 489 aaPredicted RBP18.03■□□□□ 0.48
CTCF-201ENST00000264010 STXBP4Q6ZWJ1 553 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.03■□□□□ 0.48
CTCF-201ENST00000264010 JMJD4Q9H9V9 463 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 JRKLQ9Y4A0 524 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 FRMD3A2A2Y4 597 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 FAM196BA6NMK8 535 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 ZBED6P86452 979 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 RASGRP2Q7LDG7 609 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 NELFCDQ8IXH7 590 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 RAD54LQ92698 747 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 SHISA4Q96DD7 197 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 RAD51AP2Q09MP3 1159 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 LARGE2Q8N3Y3 721 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 RABGGTAQ92696 567 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 ANO3Q9BYT9 981 aa18.03■□□□□ 0.48
CTCF-201ENST00000264010 TRIM66O15016 1216 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 NDUFA10O95299 355 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 PAFAH1B1P43034 410 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 WHAMMP3Q1A5X7 153 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 QRICH1Q2TAL8 776 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 STRIP1Q5VSL9 837 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 CSRNP1Q96S65 589 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 GYPCP04921 128 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 BMP3P12645 472 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 MAN2A1Q16706 1144 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 WDR24Q96S15 920 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 PLEKHA4Q9H4M7 779 aa18.02■□□□□ 0.48
CTCF-201ENST00000264010 GNA14O95837 355 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 IVLP07476 585 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 LRRC63Q05C16 580 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 RAD9BQ6WBX8 426 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 C4orf32Q8N8J7 132 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 DDX12PQ92771 950 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 SPAG5Q96R06 1193 aa18.02■□□□□ 0.47
CTCF-201ENST00000264010 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.02■□□□□ 0.47
CTCF-201ENST00000264010 BAZ2AQ9UIF9 1905 aaKnown RBP18.01■□□□□ 0.47
CTCF-201ENST00000264010 MYO5AQ9Y4I1 1855 aaKnown RBP18.01■□□□□ 0.47
CTCF-201ENST00000264010 SRGAP1Q7Z6B7 1085 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 VPS36Q86VN1 386 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 GOPCQ9HD26 462 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 C4AP0C0L4 1744 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 C4BP0C0L5 1744 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 CICQ96RK0 1608 aaPredicted RBP18.01■□□□□ 0.47
CTCF-201ENST00000264010 TTC26A0AVF1 554 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 RHOXF2BP0C7M4 288 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 FCER1AP12319 257 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 PEX19P40855 299 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 FXR2P51116 673 aaKnown RBP eCLIP18.01■□□□□ 0.477e-7■■■■■ 31.5
CTCF-201ENST00000264010 AP3B2Q13367 1082 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 SYDE2Q5VT97 1194 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 EP400NLQ6ZTU2 488 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 COL23A1Q86Y22 540 aaPredicted RBP18.01■□□□□ 0.47
CTCF-201ENST00000264010 RHOXF2Q9BQY4 288 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 MYO3BQ8WXR4 1341 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 MACROD2A1Z1Q3 448 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L15C9J2P7 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L13C9JLJ4 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L11C9JVI0 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L18D6R9N7 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L22D6RA61 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L17D6RBQ6 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L19D6RCP7 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L20D6RJB6 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 CLSTN1O94985 981 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 ERCC3P19447 782 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L24Q0WX57 530 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 STK4Q13043 487 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 LRRC41Q15345 812 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 ANKRD40Q6AI12 368 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 USP17L6PQ6QN14 398 aa18.01■□□□□ 0.47
CTCF-201ENST00000264010 RRAGAQ7L523 313 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms