RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 VIPAS39Q9H9C1 493 aa18.34■□□□□ 0.53
ZNF541-201ENST00000263351 BICDL2A1A5D9 508 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 TARSL2A2RTX5 802 aaKnown RBP18.33■□□□□ 0.52
ZNF541-201ENST00000263351 BTDP43251 543 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 TNNI2P48788 182 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 PDCLQ13371 301 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 MAP9Q49MG5 647 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 KLHDC7AQ5VTJ3 777 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 MSL3Q8N5Y2 521 aaKnown RBP18.33■□□□□ 0.52
ZNF541-201ENST00000263351 DAGLBQ8NCG7 672 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 ACBD3Q9H3P7 528 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 FAM184BQ9ULE4 1060 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 NFU1Q9UMS0 254 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 JRKLQ9Y4A0 524 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 IRS2Q9Y4H2 1338 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 TACC1O75410 805 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 RPS6KA5O75582 802 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 TAL1P17542 331 aaPredicted RBP18.33■□□□□ 0.52
ZNF541-201ENST00000263351 SLC16A2P36021 539 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 HGSNATQ68CP4 663 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 SV2BQ7L1I2 683 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 FAM76AQ8TAV0 307 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 LARP4BQ92615 738 aaKnown RBP18.33■□□□□ 0.52
ZNF541-201ENST00000263351 SETDB2Q96T68 719 aa18.33■□□□□ 0.52
ZNF541-201ENST00000263351 GNPATO15228 680 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 LIG3P49916 1009 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 GNGT1P63211 74 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 CALCRLQ16602 461 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 TTBK2Q6IQ55 1244 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 REXO1Q8N1G1 1221 aaKnown RBP18.32■□□□□ 0.52
ZNF541-201ENST00000263351 SNX29Q8TEQ0 813 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 NUP58Q9BVL2 599 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 GRIN2DO15399 1336 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 ANO9A1A5B4 782 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 PPFIA4O75335 1185 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 PICALMQ13492 652 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 CCDC181Q5TID7 509 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 EHBP1Q8NDI1 1231 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 TRIM58Q8NG06 486 aa18.32■□□□□ 0.52
ZNF541-201ENST00000263351 COL16A1Q07092 1604 aaPredicted RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 NOL4O94818 638 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 PRPHP41219 470 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 SLC20A2Q08357 652 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 FAM98CQ17RN3 349 aaKnown RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 SHROOM1Q2M3G4 852 aaPredicted RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 CNNM4Q6P4Q7 775 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 CACNA2D4Q7Z3S7 1137 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 CALML4Q96GE6 196 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 ZIM3Q96PE6 472 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 F8W031 263 aaPredicted RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 PALMO75781 387 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 ACTN1P12814 892 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 KLRC1P26715 233 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 NOP2P46087 812 aaKnown RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 POLR2FP61218 127 aaKnown RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 MTMR9Q96QG7 549 aa18.31■□□□□ 0.52
ZNF541-201ENST00000263351 RTFDC1Q9BY42 306 aaPredicted RBP18.31■□□□□ 0.52
ZNF541-201ENST00000263351 E9PMD0 336 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 PPP1R11O60927 126 aaPredicted RBP18.3■□□□□ 0.52
ZNF541-201ENST00000263351 SOGA3Q5TF21 947 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 CLEC4GQ6UXB4 293 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 KRT25Q7Z3Z0 450 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 BCAS4Q8TDM0 211 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 NOC3LQ8WTT2 800 aaKnown RBP18.3■□□□□ 0.52
ZNF541-201ENST00000263351 CDK5RAP3Q96JB5 506 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 C6orf50Q9HD87 102 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 UTRNP46939 3433 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 CCDC88AQ3V6T2 1871 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 RAD21O60216 631 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 USO1O60763 962 aaKnown RBP18.3■□□□□ 0.52
ZNF541-201ENST00000263351 CORO7P57737 925 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 TUBB4BP68371 445 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 GUCY2DQ02846 1103 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 MAN2A1Q16706 1144 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 PDXDC1Q6P996 788 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 MMGT1Q8N4V1 131 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 RETREG2Q8NC44 543 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 ANKS1AQ92625 1134 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 KAT2BQ92831 832 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.3■□□□□ 0.52
ZNF541-201ENST00000263351 IKZF4Q9H2S9 585 aa18.3■□□□□ 0.52
ZNF541-201ENST00000263351 TRAF5O00463 557 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 GNAQP50148 359 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 ASTE1Q2TB18 679 aaPredicted RBP18.29■□□□□ 0.52
ZNF541-201ENST00000263351 C8orf74Q6P047 294 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 ZNF662Q6ZS27 426 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 FAM114A1Q8IWE2 563 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 TEX11Q8IYF3 940 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 TBC1D5Q92609 795 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 LSM14BQ9BX40 385 aaKnown RBP18.29■□□□□ 0.52
ZNF541-201ENST00000263351 ZHX3Q9H4I2 956 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 EPB41L5Q9HCM4 733 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 STIM2Q9P246 746 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 SEC63Q9UGP8 760 aaKnown RBP18.29■□□□□ 0.52
ZNF541-201ENST00000263351 STRCQ7RTU9 1775 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 A0A1W2PQJ5 194 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 STAT3P40763 770 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 EHHADHQ08426 723 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 SLC30A10Q6XR72 485 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 UNC13DQ70J99 1090 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms