RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 STYK1Q6J9G0 422 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 WDR93Q6P2C0 686 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 LRRC1Q9BTT6 524 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 SELENOOQ9BVL4 669 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 DEF6Q9H4E7 631 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 FLT1P17948 1338 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 FAM170AA1A519 330 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 OR52Z1P0C646 297 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 PCP11498 1178 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 RNASE9P60153 205 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 KCNB1Q14721 858 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 GRM4Q14833 912 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 PAPD7Q5XG87 772 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 TMED8Q6PL24 325 aaPredicted RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 CLEC10AQ8IUN9 316 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 TBCKQ8TEA7 893 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 CRACR2AQ9BSW2 395 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 BARHL2Q9NY43 387 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 ATP6V0A2Q9Y487 856 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 FRMPD2Q68DX3 1309 aaPredicted RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 EIF4A3P38919 411 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 NAP1L1P55209 391 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 GPSM2P81274 684 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 ZBED6P86452 979 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 SPA17Q15506 151 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 SND1Q7KZF4 910 aaKnown RBP eCLIP11.17□□□□□ -0.62
LIG3-201ENST00000262327 RRAGAQ7L523 313 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 GOLGA6L1Q8N7Z2 621 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 AFAP1L1Q8TED9 768 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 PIGSQ96S52 555 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 TANGO6Q9C0B7 1094 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 TBC1D7Q9P0N9 293 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 ARHGAP20Q9P2F6 1191 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 POTEMA6NI47 508 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 LDHBP07195 334 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 MEA1Q16626 185 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 COA7Q96BR5 231 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 NUDT12Q9BQG2 462 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 MMTAG2Q9BU76 263 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 IFIH1Q9BYX4 1025 aaKnown RBP11.17□□□□□ -0.62
LIG3-201ENST00000262327 CCSER1Q9C0I3 900 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 NLRC4Q9NPP4 1024 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 SALL4Q9UJQ4 1053 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 GGA1Q9UJY5 639 aa11.17□□□□□ -0.62
LIG3-201ENST00000262327 MYH10P35580 1976 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 H0YIN7 160 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 AKR1B10O60218 316 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 GUCY2CP25092 1073 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 PTPROQ16827 1216 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 DGKHQ86XP1 1220 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 MS4A14Q96JA4 679 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 CEP83Q9Y592 693 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 MYMKA6NI61 221 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 ARID5AQ03989 594 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 SBK1Q52WX2 424 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 CCNI2Q6ZMN8 369 aaPredicted RBP11.16□□□□□ -0.62
LIG3-201ENST00000262327 DHTKD1Q96HY7 919 aaPredicted RBP11.16□□□□□ -0.62
LIG3-201ENST00000262327 ACBD3Q9H3P7 528 aa11.16□□□□□ -0.62
LIG3-201ENST00000262327 LRRC53A6NM62 1247 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 EIF3CLB5ME19 914 aaKnown RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 AGPSO00116 658 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 PRPF6O94906 941 aaKnown RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 TDP2O95551 362 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 SSBP05455 408 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIG3-201ENST00000262327 RASA1P20936 1047 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 KIF11P52732 1056 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 VAV2P52735 878 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 CACNB1Q02641 598 aaPredicted RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 GFPT1Q06210 699 aaPredicted RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 NONOQ15233 471 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIG3-201ENST00000262327 ZNF804AQ7Z570 1209 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 DNAAF5Q86Y56 855 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 EIF3CQ99613 913 aaKnown RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 PCDHA13Q9Y5I0 950 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 SRCAPQ6ZRS2 3230 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 ZC3H4Q9UPT8 1303 aaKnown RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 RASSF7Q02833 373 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 CREG2Q8IUH2 290 aa11.15□□□□□ -0.62
LIG3-201ENST00000262327 CCDC47Q96A33 483 aaKnown RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 TMX4Q9H1E5 349 aaPredicted RBP11.15□□□□□ -0.62
LIG3-201ENST00000262327 COL11A2P13942 1736 aaPredicted RBP11.15□□□□□ -0.63
LIG3-201ENST00000262327 ESYT3A0FGR9 886 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 BICDL2A1A5D9 508 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 USP17L5A8MUK1 530 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 SLC37A4O43826 429 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 CKAP4Q07065 602 aaKnown RBP11.15□□□□□ -0.63
LIG3-201ENST00000262327 TDRD12Q587J7 1177 aaKnown RBP11.15□□□□□ -0.63
LIG3-201ENST00000262327 KCNK18Q7Z418 384 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 NEK8Q86SG6 692 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 CNKSR1Q969H4 720 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 EYA3Q99504 573 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 NDST4Q9H3R1 872 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 MED4Q9NPJ6 270 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 SH3GLB2Q9NR46 395 aa11.15□□□□□ -0.63
LIG3-201ENST00000262327 MKRN1Q9UHC7 482 aaKnown RBP11.15□□□□□ -0.63
LIG3-201ENST00000262327 PALM3A6NDB9 673 aaPredicted RBP11.14□□□□□ -0.63
LIG3-201ENST00000262327 ZSCAN5CA6NGD5 496 aaPredicted RBP11.14□□□□□ -0.63
LIG3-201ENST00000262327 UFL1O94874 794 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 CCDC172P0C7W6 258 aa11.14□□□□□ -0.63
LIG3-201ENST00000262327 SLURP2P0DP57 97 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms