RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 TUBE1Q9UJT0 475 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 EPHB4P54760 987 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 AMPD3Q01432 767 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 STK4Q13043 487 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 CCDC93Q567U6 631 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 TRIM65Q6PJ69 517 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 SV2BQ7L1I2 683 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 ZNF384Q8TF68 577 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 LRRC45Q96CN5 670 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 IL17RAQ96F46 866 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 TRIM31Q9BZY9 425 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 ZNF287Q9HBT7 754 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 L1RE1Q9UN81 338 aa12.71□□□□□ -0.38
SOX9-201ENST00000245479 XRN1Q8IZH2 1706 aaKnown RBP12.71□□□□□ -0.38
SOX9-201ENST00000245479 KIF1CO43896 1103 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 PLEKP08567 350 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 LACTBP83111 547 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 MKRN4PQ13434 485 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 KIAA0753Q2KHM9 967 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 GKAP1Q5VSY0 366 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 MIGA2Q7L4E1 593 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 TCP11Q8WWU5 503 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 NOX5Q96PH1 765 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.7□□□□□ -0.385e-6■□□□□ 9.7
SOX9-201ENST00000245479 HPSEQ9Y251 543 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 KDM4FA0A1W2PPD8 638 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 TCP10L2B9ZVM9 353 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 SSR1P43307 286 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 PABPC4Q13310 644 aaKnown RBP eCLIP12.7□□□□□ -0.38
SOX9-201ENST00000245479 CCDC6Q16204 474 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 HNRNPLLQ8WVV9 542 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 TRIM6Q9C030 488 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 SPATS2LQ9NUQ6 558 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 HYOU1Q9Y4L1 999 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 CTDP1Q9Y5B0 961 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 PCDHB13Q9Y5F0 798 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 TCP1P17987 556 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 CTNNA1P35221 906 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 CNOT6LQ96LI5 555 aaKnown RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 CD209Q9NNX6 404 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 ATP8A2Q9NTI2 1148 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 PCDHA4Q9UN74 947 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 PACSIN2Q9UNF0 486 aaPredicted RBP12.7□□□□□ -0.38
SOX9-201ENST00000245479 KIAA1024Q9UPX6 916 aa12.7□□□□□ -0.38
SOX9-201ENST00000245479 GSTTP1A0A1W2PQM5 241 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 BICDL2A1A5D9 508 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 AKR1B1P15121 316 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 GNA11P29992 359 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 PCK1P35558 622 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 USP14P54578 494 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 SEC23AQ15436 765 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 SHISA4Q96DD7 197 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 PHF20Q9BVI0 1012 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 NUP58Q9BVL2 599 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 GOLPH3Q9H4A6 298 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 IL17RBQ9NRM6 502 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 XDHP47989 1333 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 CLIC2O15247 247 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 OR52Z1P0C646 297 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 IRAK1P51617 712 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 RGPD5Q99666 1765 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 FAM208AQ9UK61 1670 aaKnown RBP12.69□□□□□ -0.38
SOX9-201ENST00000245479 NCK2O43639 380 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 NR1D1P20393 614 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 HIBCHQ6NVY1 386 aaPredicted RBP12.69□□□□□ -0.38
SOX9-201ENST00000245479 GLIS3Q8NEA6 775 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.69□□□□□ -0.38
SOX9-201ENST00000245479 SWAP70Q9UH65 585 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 TMEM110-MUSTN1A8MSY1 372 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 USP17L10C9JJH3 530 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 E9PMD0 336 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 GSTO1P78417 241 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 ALX1Q15699 326 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 IFI16Q16666 785 aaKnown RBP12.69□□□□□ -0.38
SOX9-201ENST00000245479 PFKFB3Q16875 520 aaPredicted RBP12.69□□□□□ -0.38
SOX9-201ENST00000245479 NAA35Q5VZE5 725 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 NEK8Q86SG6 692 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 EPB41L5Q9HCM4 733 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 DISC1Q9NRI5 854 aa12.69□□□□□ -0.38
SOX9-201ENST00000245479 THRAP3Q9Y2W1 955 aaKnown RBP12.69□□□□□ -0.38
SOX9-201ENST00000245479 SPATA31A1Q5TZJ5 1347 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 MED1Q15648 1581 aaPredicted RBP12.68□□□□□ -0.38
SOX9-201ENST00000245479 NALCNQ8IZF0 1738 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 GTPBP6O43824 516 aaPredicted RBP12.68□□□□□ -0.38
SOX9-201ENST00000245479 GNAQP50148 359 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 RASSF7Q02833 373 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 CCDC170Q8IYT3 715 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 GSDMAQ96QA5 445 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 STK38LQ9Y2H1 464 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 CEP104O60308 925 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 GYPCP04921 128 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 HLA-DOAP06340 250 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 TCP11X2Q5H9J9 407 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 RSRC2Q7L4I2 434 aaKnown RBP12.68□□□□□ -0.38
SOX9-201ENST00000245479 MED15Q96RN5 788 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 PAIP2Q9BPZ3 127 aaKnown RBP12.68□□□□□ -0.38
SOX9-201ENST00000245479 MLXIPQ9HAP2 919 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 FMN2Q9NZ56 1722 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 FBF1Q8TES7 1133 aa12.68□□□□□ -0.38
SOX9-201ENST00000245479 TAOK3Q9H2K8 898 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms