RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 GJA10Q969M2 543 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 RAVER2Q9HCJ3 691 aaKnown RBP16.71■□□□□ 0.27
CCDC47-201ENST00000225726 ZC3H4Q9UPT8 1303 aaKnown RBP16.71■□□□□ 0.27
CCDC47-201ENST00000225726 ADM5C9JUS6 153 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 HMGCS2P54868 508 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 SV2BQ7L1I2 683 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 BLOC1S4Q9NUP1 217 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 AFG3L2Q9Y4W6 797 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 OTOFQ9HC10 1997 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 KLRC4O43908 158 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 MAP3K9P80192 1104 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 RAD54LQ92698 747 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 FANCLQ9NW38 375 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 TMOD4Q9NZQ9 345 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 RABGAP1Q9Y3P9 1069 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 STK24Q9Y6E0 443 aa16.71■□□□□ 0.26
CCDC47-201ENST00000225726 RLFQ13129 1914 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 MSNP26038 577 aaKnown RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 FANCCQ00597 558 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 PAXIP1Q6ZW49 1069 aaPredicted RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 PLCD3Q8N3E9 789 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 LARP4BQ92615 738 aaKnown RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 CCDC47Q96A33 483 aaKnown RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 NUDT12Q9BQG2 462 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 TRIM9Q9C026 710 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 NT5C3AQ9H0P0 336 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 MAP3K20Q9NYL2 800 aaKnown RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 SYNRGQ9UMZ2 1314 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 RHOBTB3O94955 611 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 PRKG1Q13976 671 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 KMT5BQ4FZB7 885 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 GTPBP4Q9BZE4 634 aaKnown RBP16.7■□□□□ 0.26
CCDC47-201ENST00000225726 IFNKQ9P0W0 207 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 SNCAIPQ9Y6H5 919 aa16.7■□□□□ 0.26
CCDC47-201ENST00000225726 IGLV3-22A0A075B6J6 115 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 VWA5AO00534 786 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 MSH4O15457 936 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 ALAS1P13196 640 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 CCT6AP40227 531 aaKnown RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 SMYD4Q8IYR2 804 aaPredicted RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 CPXCR1Q8N123 301 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 LRRC27Q9C0I9 530 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 NFE2L3Q9Y4A8 694 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 SH3D19Q5HYK7 790 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 KRT26Q7Z3Y9 468 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 TRMT44Q8IYL2 757 aaKnown RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 ZC3H15Q8WU90 426 aaKnown RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 BBXQ8WY36 941 aaPredicted RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 ATG4CQ96DT6 458 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 MED15Q96RN5 788 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 RPTORQ8N122 1335 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 NFIBO00712 420 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 CBFA2T2O43439 604 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 PPP1R12BO60237 982 aaPredicted RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 ATP1A3P13637 1013 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 SPIRE1Q08AE8 756 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 VGLL4Q14135 290 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 SPATA1Q5VX52 437 aa16.69■□□□□ 0.26
CCDC47-201ENST00000225726 XPO4Q9C0E2 1151 aaKnown RBP16.69■□□□□ 0.26
CCDC47-201ENST00000225726 ZNF18P17022 549 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 DSG3P32926 999 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 MCM6Q14566 821 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 ERMNQ8TAM6 284 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 RBM46Q8TBY0 533 aaKnown RBP16.68■□□□□ 0.26
CCDC47-201ENST00000225726 EPHX2P34913 555 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 HAUS3Q68CZ6 603 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 KLHL10Q6JEL2 608 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 CTNND2Q9UQB3 1225 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 RRP9O43818 475 aaKnown RBP16.68■□□□□ 0.26
CCDC47-201ENST00000225726 IREB2P48200 963 aaKnown RBP16.68■□□□□ 0.26
CCDC47-201ENST00000225726 OAZ1P54368 228 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 ASIC1P78348 528 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 GPR162Q16538 588 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 ECM1Q16610 540 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 CNNM4Q6P4Q7 775 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 CATSPERGQ6ZRH7 1159 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 RWDD2AQ9UIY3 292 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 ADAMTS5Q9UNA0 930 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 CSADQ9Y600 493 aa16.68■□□□□ 0.26
CCDC47-201ENST00000225726 COL11A1P12107 1806 aaPredicted RBP16.67■□□□□ 0.26
CCDC47-201ENST00000225726 STAT3P40763 770 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 MUM1L1Q5H9M0 696 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 DLK2Q6UY11 383 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 REPS2Q8NFH8 660 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 CYP2W1Q8TAV3 490 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 UIMC1Q96RL1 719 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 EXOC1Q9NV70 894 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 SCN4AP35499 1836 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 SERPINC1P01008 464 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 SETQ01105 290 aaPredicted RBP16.67■□□□□ 0.26
CCDC47-201ENST00000225726 COG2Q14746 738 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 VAV3Q9UKW4 847 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 GDAQ9Y2T3 454 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 MYPNQ86TC9 1320 aa16.67■□□□□ 0.26
CCDC47-201ENST00000225726 PAK1Q13153 545 aa16.66■□□□□ 0.26
CCDC47-201ENST00000225726 CEP55Q53EZ4 464 aa16.66■□□□□ 0.26
CCDC47-201ENST00000225726 NCAPH2Q6IBW4 605 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms