RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 PBRM1Q86U86 1689 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 STX2P32856 288 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 TSTA3Q13630 321 aaPredicted RBP20.64■□□□□ 0.9
SMPD3-201ENST00000219334 TBC1D10BQ4KMP7 808 aaPredicted RBP20.64■□□□□ 0.9
SMPD3-201ENST00000219334 PI16Q6UXB8 463 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 FANCLQ9NW38 375 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 STK17AQ9UEE5 414 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 EIF2AK2P19525 551 aaKnown RBP20.64■□□□□ 0.9
SMPD3-201ENST00000219334 CDK8P49336 464 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 NDUFA8P51970 172 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 CDKL2Q92772 493 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 PLEKHA4Q9H4M7 779 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 LRRC4Q9HBW1 653 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 OGFRQ9NZT2 677 aa20.64■□□□□ 0.9
SMPD3-201ENST00000219334 SLC39A14Q15043 492 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 C7orf31Q8N865 590 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 ZBED2Q9BTP6 218 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 HAUS4Q9H6D7 363 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 SRGAP2BP0DMP2 458 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 NT5C2P49902 561 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 WHAMMP3Q1A5X7 153 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 MICAL1Q8TDZ2 1067 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 MAD1L1Q9Y6D9 718 aa20.64■□□□□ 0.89
SMPD3-201ENST00000219334 PPP6R2O75170 966 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 TROVE2P10155 538 aaKnown RBP eCLIP20.63■□□□□ 0.89
SMPD3-201ENST00000219334 TCP1P17987 556 aaKnown RBP20.63■□□□□ 0.89
SMPD3-201ENST00000219334 PPP1R2P3Q6NXS1 205 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 ANKRD42Q8N9B4 389 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 TTLL11Q8NHH1 800 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 DHTKD1Q96HY7 919 aaPredicted RBP20.63■□□□□ 0.89
SMPD3-201ENST00000219334 ABCC12Q96J65 1359 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 PTPROQ16827 1216 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 GCNAQ96QF7 691 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 VCXQ9H320 206 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 FBXO40Q9UH90 709 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 NARFQ9UHQ1 456 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 SPATA31A3Q5VYP0 1347 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 A0A1W2PQ27 194 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 A0A1W2PQ64 194 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 A0A1W2PQD8 194 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 RNF40O75150 1001 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 ANXA13P27216 316 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 RFX6Q8HWS3 928 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 TUBGCP2Q9BSJ2 902 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 SLC38A10Q9HBR0 1119 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 ATF2P15336 505 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 GARSP41250 739 aaKnown RBP20.63■□□□□ 0.89
SMPD3-201ENST00000219334 SURF1Q15526 300 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 RNF207Q6ZRF8 634 aa20.63■□□□□ 0.89
SMPD3-201ENST00000219334 PUS7LQ9H0K6 701 aaKnown RBP20.63■□□□□ 0.89
SMPD3-201ENST00000219334 NXF1Q9UBU9 619 aaKnown RBP20.63■□□□□ 0.89
SMPD3-201ENST00000219334 PNMA6FA0A0J9YX94 578 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 AFPP02771 609 aaKnown RBP20.62■□□□□ 0.89
SMPD3-201ENST00000219334 CTNNA1P35221 906 aaKnown RBP20.62■□□□□ 0.89
SMPD3-201ENST00000219334 COPB1P53618 953 aaKnown RBP20.62■□□□□ 0.89
SMPD3-201ENST00000219334 RASGRF1Q13972 1273 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 PTPN12Q05209 780 aaKnown RBP20.62■□□□□ 0.89
SMPD3-201ENST00000219334 ZBTB33Q86T24 672 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 CABS1Q96KC9 395 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 GPR101Q96P66 508 aaPredicted RBP20.62■□□□□ 0.89
SMPD3-201ENST00000219334 MED7O43513 233 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 ADRA2BP18089 450 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 SAT1P21673 171 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 RBBP5Q15291 538 aaKnown RBP20.62■□□□□ 0.89
SMPD3-201ENST00000219334 HOXC10Q9NYD6 342 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 BCAP29Q9UHQ4 241 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 MEIS1O00470 390 aa20.62■□□□□ 0.89
SMPD3-201ENST00000219334 GH2P01242 217 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 TTBK2Q6IQ55 1244 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 TAB3Q8N5C8 712 aaPredicted RBP20.61■□□□□ 0.89
SMPD3-201ENST00000219334 TRIM56Q9BRZ2 755 aaKnown RBP20.61■□□□□ 0.89
SMPD3-201ENST00000219334 PCIF1Q9H4Z3 704 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 ARMCX2Q7L311 632 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 S100BP04271 92 aaPredicted RBP20.61■□□□□ 0.89
SMPD3-201ENST00000219334 CRKP46108 304 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 LMNB2Q03252 620 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 ZNF589Q86UQ0 364 aaPredicted RBP20.61■□□□□ 0.89
SMPD3-201ENST00000219334 C10orf67Q8IYJ2 551 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 MYL3P08590 195 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 CACNB1Q02641 598 aaPredicted RBP20.61■□□□□ 0.89
SMPD3-201ENST00000219334 MESDQ14696 234 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 ELF2Q15723 593 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 MGARPQ8TDB4 240 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 TSC1Q92574 1164 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 SLC8A2Q9UPR5 921 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 RGS12O14924 1447 aa20.61■□□□□ 0.89
SMPD3-201ENST00000219334 ZBTB7AO95365 584 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 OSTNP61366 133 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 FKBP3Q00688 224 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 PODNQ7Z5L7 613 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 CCDC13Q8IYE1 715 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 PARD3BQ8TEW8 1205 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 OSBP2Q969R2 916 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 EEF2KMTQ96G04 330 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 DESI2Q9BSY9 194 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 PARVGQ9HBI0 331 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 HOMER3Q9NSC5 361 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 PRPF3O43395 683 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 GNAT1P11488 350 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms