RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 BACH1O14867 736 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SSBP05455 408 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP28-201ENST00000003302 PDHBP11177 359 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 TNNI2P48788 182 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 ZSCAN29Q8IWY8 852 aaPredicted RBP11.89□□□□□ -0.51
USP28-201ENST00000003302 PLAGL2Q9UPG8 496 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 COL14A1Q05707 1796 aaKnown RBP11.89□□□□□ -0.51
USP28-201ENST00000003302 BMP15O95972 392 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 ZBED6P86452 979 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 CLEC4GQ6UXB4 293 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 NEK8Q86SG6 692 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SH2D4AQ9H788 454 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SNX12Q9UMY4 172 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SAMM50Q9Y512 469 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 MEIS1O00470 390 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 RIMBP2O15034 1052 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 KLRC1P26715 233 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 CALML3P27482 149 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 SLC10A5Q5PT55 438 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 KLHDC7AQ5VTJ3 777 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 HAUS3Q68CZ6 603 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 CCDC148Q8NFR7 591 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 CCDC42Q96M95 316 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 ZNF652Q9Y2D9 606 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 LRRN2O75325 713 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 ATP1A2P50993 1020 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 SCNN1DP51172 638 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 SPAG1Q07617 926 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 OSBPL9Q96SU4 736 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 HYOU1Q9Y4L1 999 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 A0A087X0T9 212 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 EIF3CLB5ME19 914 aaKnown RBP11.88□□□□□ -0.51
USP28-201ENST00000003302 ZBTB39O15060 712 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 FAM228BP0C875 321 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 NFIAQ12857 509 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 SF3A3Q12874 501 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP28-201ENST00000003302 NONOQ15233 471 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP28-201ENST00000003302 ASTE1Q2TB18 679 aaPredicted RBP11.88□□□□□ -0.51
USP28-201ENST00000003302 GJB7Q6PEY0 223 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 DDX42Q86XP3 938 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP28-201ENST00000003302 CYP2W1Q8TAV3 490 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 GOLGA5Q8TBA6 731 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 EIF3CQ99613 913 aaKnown RBP11.88□□□□□ -0.51
USP28-201ENST00000003302 RMND1Q9NWS8 449 aa11.88□□□□□ -0.51
USP28-201ENST00000003302 VWA3BQ502W6 1294 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 UBAP2Q5T6F2 1119 aaKnown RBP11.87□□□□□ -0.51
USP28-201ENST00000003302 SECISBP2LQ93073 1101 aaKnown RBP11.87□□□□□ -0.51
USP28-201ENST00000003302 DNAJC19Q96DA6 116 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 POTEB3A0JP26 581 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 POTECB2RU33 542 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 VAV2P52735 878 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 POTEBQ6S5H4 581 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 TEX11Q8IYF3 940 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 CERS5Q8N5B7 392 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 C7orf25Q9BPX7 421 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 NARFQ9UHQ1 456 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 GRIN2DO15399 1336 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 MYH4Q9Y623 1939 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 GUCY2FP51841 1108 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 KSR1Q8IVT5 923 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 OR2W6PQ8NHA6 318 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 AENQ8WTP8 325 aaKnown RBP11.87□□□□□ -0.51
USP28-201ENST00000003302 TCP11L1Q9NUJ3 509 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 MAGEC2Q9UBF1 373 aaPredicted RBP11.87□□□□□ -0.51
USP28-201ENST00000003302 ADAMTS1Q9UHI8 967 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 USP17L10C9JJH3 530 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 RFC4P35249 363 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 STIM1Q13586 685 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 MFSD14BQ5SR56 506 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 REXO1Q8N1G1 1221 aaKnown RBP11.87□□□□□ -0.51
USP28-201ENST00000003302 C8orf37Q96NL8 207 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 ERGIC2Q96RQ1 377 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 CD209Q9NNX6 404 aa11.87□□□□□ -0.51
USP28-201ENST00000003302 MKRN4PQ13434 485 aaPredicted RBP11.86□□□□□ -0.51
USP28-201ENST00000003302 CT47A1Q5JQC4 288 aaPredicted RBP11.86□□□□□ -0.51
USP28-201ENST00000003302 SNX29Q8TEQ0 813 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 LARP4BQ92615 738 aaKnown RBP11.86□□□□□ -0.51
USP28-201ENST00000003302 KAT2BQ92831 832 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 TANGO6Q9C0B7 1094 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 RTCBQ9Y3I0 505 aaKnown RBP11.86□□□□□ -0.51
USP28-201ENST00000003302 NAV1Q8NEY1 1877 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 RSPH10B2B2RC85 870 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 KRT86O43790 486 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 UFL1O94874 794 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 RSPH10BP0C881 870 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 DPP8Q6V1X1 898 aaPredicted RBP11.86□□□□□ -0.51
USP28-201ENST00000003302 ANKRD20A12PQ8NF67 263 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 NFU1Q9UMS0 254 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 NRAPQ86VF7 1730 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 HOXD13P35453 343 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 CALCRLQ16602 461 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 ARFGEF1Q9Y6D6 1849 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 SFI1A8K8P3 1242 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 AKR1B10O60218 316 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 CCT5P48643 541 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 KIF5AQ12840 1032 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 PDCLQ13371 301 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 FAM133AQ8N9E0 248 aa11.86□□□□□ -0.51
USP28-201ENST00000003302 CHORDC1Q9UHD1 332 aaPredicted RBP11.86□□□□□ -0.51
USP28-201ENST00000003302 POTEFA5A3E0 1075 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms