RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	RPL24A	P04449	155 aa	Known RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	RPP2A	P05319	106 aa	Known RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	RAD7	P06779	565 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	KGD1	P20967	1014 aa	Known RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	RNR1	P21524	888 aa	Known RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	SEC62	P21825	274 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	PEX1	P24004	1043 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	RRP1	P35178	278 aa	Predicted RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	CBR1	P38626	284 aa	Known RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	RTT107	P38850	1070 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	GSM1	P42950	618 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	CHA4	P43634	648 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	NMD5	P46970	1048 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	EXG2	P52911	562 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	YGL114W	P53134	725 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	MPS2	P53159	387 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	WAR1	Q03631	944 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	ACL4	Q03771	387 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	MUS81	Q04149	632 aa	Predicted RBP	4.04	□□□□□ -1.76
UBP6	YFR010W	RRG8	Q06109	277 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	NDL1	Q06568	189 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	ECM30	Q06673	1274 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	FMP16	Q12497	93 aa		4.04	□□□□□ -1.76
UBP6	YFR010W	GAL80	P04387	435 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	RPS3	P05750	240 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	SCH9	P11792	824 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	SAG1	P20840	650 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	IME1	P21190	360 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	IDH2	P28241	369 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	RAD14	P28519	371 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	PRO3	P32263	286 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	SSE2	P32590	693 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	SPR1	P32603	445 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	TRM2	P33753	639 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	WBP1	P33767	430 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	HCS1	P34243	683 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	APT2	P36973	181 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	APN2	P38207	520 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	SWC5	P38326	303 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	YHR033W	P38690	423 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	MIP6	P38760	659 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	END3	P39013	349 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	PZF1	P39933	429 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	AGE2	P40529	298 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	DSN1	P40568	576 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	FKH2	P41813	862 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	TMA22	P47089	198 aa	Predicted RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	YGR149W	P48236	432 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	PHO23	P50947	330 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	LIF1	P53150	421 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	DIP5	P53388	608 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	DBP6	P53734	629 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	CUS2	P53830	285 aa	Predicted RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	EAF7	P53911	425 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	TRS31	Q03337	283 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	VPS64	Q03944	604 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	PDS5	Q04264	1277 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	CTS2	Q06350	511 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	VPS74	Q06385	345 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	BSC6	Q08280	497 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	NRT1	Q08485	598 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	YDL109C	Q12103	647 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	TIP41	Q12199	356 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	ERG27	Q12452	347 aa	Known RBP	4.03	□□□□□ -1.76
UBP6	YFR010W	MTR10	Q99189	972 aa		4.03	□□□□□ -1.76
UBP6	YFR010W	GAL4	P04386	881 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	PMA1	P05030	918 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	MSF1	P08425	469 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	RPL35A	P0CX84	120 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	RPL35B	P0CX85	120 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	GAL3	P13045	520 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	YCP4	P25349	247 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	ATP7	P30902	174 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	DCG1	P32460	244 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	MTC7	P32633	139 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	VPS51	P36116	164 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	AIM29	P36154	155 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	PPS1	P38148	807 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	APD1	P38281	316 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	RFC4	P40339	323 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	YIL108W	P40483	696 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	URM1	P40554	99 aa	Predicted RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	MAF1	P41910	395 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	YJL107C	P42947	387 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	CTK2	P46962	323 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	RIB4	P50861	169 aa	Predicted RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	DIA3	P52290	468 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	TAM41	P53230	385 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	SLX9	P53251	210 aa	Predicted RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	ZPR1	P53303	486 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	DUS1	P53759	423 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	DIA1	P54005	336 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	RNT1	Q02555	471 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	ENT5	Q03769	411 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	SNA4	Q07549	140 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	WHI4	Q07655	649 aa	Known RBP	4.02	□□□□□ -1.77
UBP6	YFR010W	NPC2	Q12408	173 aa		4.02	□□□□□ -1.77
UBP6	YFR010W	TDH2	P00358	332 aa	Known RBP	4.01	□□□□□ -1.77
UBP6	YFR010W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
UBP6	YFR010W	RNR2	P09938	399 aa	Known RBP	4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 23.2 ms