RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C ATG29Q12092 213 aa3.49□□□□□ -1.85
RUB1YDR139C RTP1Q12751 981 aa3.49□□□□□ -1.85
RUB1YDR139C RPL20AP0CX23 172 aaKnown RBP3.48□□□□□ -1.85
RUB1YDR139C RPL20BP0CX24 172 aaPredicted RBP3.48□□□□□ -1.85
RUB1YDR139C GLK1P17709 500 aaKnown RBP3.48□□□□□ -1.85
RUB1YDR139C LOS1P33418 1100 aaPredicted RBP3.48□□□□□ -1.85
RUB1YDR139C CMC1P36064 111 aa3.48□□□□□ -1.85
RUB1YDR139C MTC4P38335 694 aaKnown RBP3.48□□□□□ -1.85
RUB1YDR139C MET18P40469 1032 aa3.48□□□□□ -1.85
RUB1YDR139C RPR2P40571 144 aa3.48□□□□□ -1.85
RUB1YDR139C ELP2P42935 788 aa3.48□□□□□ -1.85
RUB1YDR139C YDL186WP48568 277 aa3.48□□□□□ -1.85
RUB1YDR139C CFT2Q12102 859 aaPredicted RBP3.48□□□□□ -1.85
RUB1YDR139C YML133CQ03099 1374 aa3.48□□□□□ -1.85
RUB1YDR139C YLL067CQ07888 1374 aa3.48□□□□□ -1.85
RUB1YDR139C YLL066CQ99208 1374 aa3.48□□□□□ -1.85
RUB1YDR139C MES1P00958 751 aaKnown RBP3.47□□□□□ -1.85
RUB1YDR139C GDH1P07262 454 aaKnown RBP3.47□□□□□ -1.85
RUB1YDR139C ATS1P31386 333 aa3.47□□□□□ -1.85
RUB1YDR139C PMU1P36069 295 aa3.47□□□□□ -1.85
RUB1YDR139C SHO1P40073 367 aa3.47□□□□□ -1.85
RUB1YDR139C ALG8P40351 577 aa3.47□□□□□ -1.85
RUB1YDR139C URB2P47108 1174 aa3.47□□□□□ -1.85
RUB1YDR139C COS10P52924 374 aa3.47□□□□□ -1.85
RUB1YDR139C JJJ1P53863 590 aa3.47□□□□□ -1.85
RUB1YDR139C MRPL19P53875 158 aa3.47□□□□□ -1.85
RUB1YDR139C SLG1P54867 378 aa3.47□□□□□ -1.85
RUB1YDR139C AYT1Q12226 474 aa3.47□□□□□ -1.85
RUB1YDR139C ATR1P13090 542 aa3.46□□□□□ -1.86
RUB1YDR139C CKA1P15790 372 aa3.46□□□□□ -1.86
RUB1YDR139C PRP16P15938 1071 aaPredicted RBP3.46□□□□□ -1.86
RUB1YDR139C MCK1P21965 375 aaKnown RBP3.46□□□□□ -1.86
RUB1YDR139C YCR022CP25620 114 aa3.46□□□□□ -1.86
RUB1YDR139C GPI10P30777 616 aa3.46□□□□□ -1.86
RUB1YDR139C MFT1P33441 392 aaKnown RBP3.46□□□□□ -1.86
RUB1YDR139C SEC66P33754 206 aa3.46□□□□□ -1.86
RUB1YDR139C PMT1P33775 817 aa3.46□□□□□ -1.86
RUB1YDR139C POP1P41812 875 aa3.46□□□□□ -1.86
RUB1YDR139C HXT14P42833 540 aa3.46□□□□□ -1.86
RUB1YDR139C OCA1P50946 238 aaPredicted RBP3.46□□□□□ -1.86
RUB1YDR139C IMP4P53941 290 aaKnown RBP3.46□□□□□ -1.86
RUB1YDR139C KEL3Q08979 651 aaPredicted RBP3.46□□□□□ -1.86
RUB1YDR139C INH1P01097 85 aa3.45□□□□□ -1.86
RUB1YDR139C MET17P06106 444 aa3.45□□□□□ -1.86
RUB1YDR139C CPR3P25719 182 aa3.45□□□□□ -1.86
RUB1YDR139C AGA1P32323 725 aa3.45□□□□□ -1.86
RUB1YDR139C ATP11P32453 318 aa3.45□□□□□ -1.86
RUB1YDR139C TUL1P36096 758 aa3.45□□□□□ -1.86
RUB1YDR139C CBP4P37267 147 aa3.45□□□□□ -1.86
RUB1YDR139C HAT2P39984 401 aa3.45□□□□□ -1.86
RUB1YDR139C GWT1P47026 490 aa3.45□□□□□ -1.86
RUB1YDR139C YGL108CP53139 140 aa3.45□□□□□ -1.86
RUB1YDR139C RQC1Q05468 723 aaKnown RBP3.45□□□□□ -1.86
RUB1YDR139C GRX6Q12438 231 aa3.45□□□□□ -1.86
RUB1YDR139C HEM2P05373 342 aa3.44□□□□□ -1.86
RUB1YDR139C ROX1P25042 368 aa3.44□□□□□ -1.86
RUB1YDR139C PUT3P25502 979 aaPredicted RBP3.44□□□□□ -1.86
RUB1YDR139C YBP1P38315 674 aa3.44□□□□□ -1.86
RUB1YDR139C KRE9P39005 276 aa3.44□□□□□ -1.86
RUB1YDR139C FAU1P40099 211 aa3.44□□□□□ -1.86
RUB1YDR139C SYG1P40528 902 aa3.44□□□□□ -1.86
RUB1YDR139C YJL132WP47014 750 aa3.44□□□□□ -1.86
RUB1YDR139C MDM1Q01846 1127 aa3.44□□□□□ -1.86
RUB1YDR139C RKM5Q12367 367 aa3.44□□□□□ -1.86
RUB1YDR139C LEU4P06208 619 aaKnown RBP3.43□□□□□ -1.86
RUB1YDR139C CDC31P06704 161 aaKnown RBP3.43□□□□□ -1.86
RUB1YDR139C RHO2P06781 192 aa3.43□□□□□ -1.86
RUB1YDR139C SPB1P25582 841 aaPredicted RBP3.43□□□□□ -1.86
RUB1YDR139C BUB3P26449 341 aa3.43□□□□□ -1.86
RUB1YDR139C FUN19P28003 413 aaPredicted RBP3.43□□□□□ -1.86
RUB1YDR139C RAD14P28519 371 aa3.43□□□□□ -1.86
RUB1YDR139C RSM22P36056 628 aa3.43□□□□□ -1.86
RUB1YDR139C OTU2P38747 307 aaKnown RBP3.43□□□□□ -1.86
RUB1YDR139C KEL1P38853 1164 aaKnown RBP3.43□□□□□ -1.86
RUB1YDR139C YHR218WP38899 603 aa3.43□□□□□ -1.86
RUB1YDR139C SMF1P38925 575 aa3.43□□□□□ -1.86
RUB1YDR139C TAP42Q04372 366 aa3.43□□□□□ -1.86
RUB1YDR139C SCW10Q04951 389 aa3.43□□□□□ -1.86
RUB1YDR139C CTF3Q12748 733 aa3.43□□□□□ -1.86
RUB1YDR139C LPD1P09624 499 aaKnown RBP3.42□□□□□ -1.86
RUB1YDR139C RED1P14291 827 aa3.42□□□□□ -1.86
RUB1YDR139C AFG1P32317 509 aa3.42□□□□□ -1.86
RUB1YDR139C REC114P32841 428 aa3.42□□□□□ -1.86
RUB1YDR139C JNM1P36224 373 aa3.42□□□□□ -1.86
RUB1YDR139C YMR147WP40218 223 aaKnown RBP3.42□□□□□ -1.86
RUB1YDR139C IDP2P41939 412 aa3.42□□□□□ -1.86
RUB1YDR139C YGR149WP48236 432 aa3.42□□□□□ -1.86
RUB1YDR139C RMD9P53140 646 aaKnown RBP3.42□□□□□ -1.86
RUB1YDR139C OGG1P53397 376 aaPredicted RBP3.42□□□□□ -1.86
RUB1YDR139C GIR2Q03768 265 aaPredicted RBP3.42□□□□□ -1.86
RUB1YDR139C TAF11Q04226 346 aa3.42□□□□□ -1.86
RUB1YDR139C SOV1Q04748 898 aa3.42□□□□□ -1.86
RUB1YDR139C YLL032CQ07834 825 aaKnown RBP RIP-Chip data3.42□□□□□ -1.86not detected
RUB1YDR139C RTN2Q12443 393 aa3.42□□□□□ -1.86
RUB1YDR139C CRM1P30822 1084 aaKnown RBP3.41□□□□□ -1.86
RUB1YDR139C GYP6P32806 458 aa3.41□□□□□ -1.86
RUB1YDR139C FRE2P36033 711 aa3.41□□□□□ -1.86
RUB1YDR139C SRB7P47822 140 aa3.41□□□□□ -1.86
RUB1YDR139C SPS4P09937 338 aa3.4□□□□□ -1.87
RUB1YDR139C TIF5P38431 405 aaKnown RBP3.4□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms