RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-229	ENST00000641891	LARP4B	Q92615	738 aa	Known RBP	19	■□□□□ 0.63
PHGDH-229	ENST00000641891	CCDC47	Q96A33	483 aa	Known RBP	19	■□□□□ 0.63
PHGDH-229	ENST00000641891	LZTFL1	Q9NQ48	299 aa		19	■□□□□ 0.63
PHGDH-229	ENST00000641891	ATF5	Q9Y2D1	282 aa	Predicted RBP	19	■□□□□ 0.63
PHGDH-229	ENST00000641891	ARFGEF1	Q9Y6D6	1849 aa		19	■□□□□ 0.63
PHGDH-229	ENST00000641891	TAL1	P17542	331 aa	Predicted RBP	18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	CCNE1	P24864	410 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	RRP1B	Q14684	758 aa	Known RBP	18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	MB21D1	Q8N884	522 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	PRMT6	Q96LA8	375 aa	Predicted RBP	18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	PCDHA1	Q9Y5I3	950 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891		B4DLN1	442 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	FECH	P22830	423 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	EEF1G	P26641	437 aa	Known RBP	18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	RXRB	P28702	533 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	SEMA3F	Q13275	785 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	EZH2	Q15910	746 aa	Known RBP	18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	KIFC2	Q96AC6	838 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	CCDC51	Q96ER9	411 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	MAGEC2	Q9UBF1	373 aa	Predicted RBP	18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	STK17A	Q9UEE5	414 aa		18.99	■□□□□ 0.63
PHGDH-229	ENST00000641891	NKRF	O15226	690 aa	Known RBP eCLIP	18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	C21orf2	O43822	256 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	CASQ1	P31415	396 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	PDIA5	Q14554	519 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	ABCB5	Q2M3G0	1257 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	ERCC6L	Q2NKX8	1250 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	TMEM119	Q4V9L6	283 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	KRT79	Q5XKE5	535 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	TMEM179	Q6ZVK1	233 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	ACRBP	Q8NEB7	543 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	ZNF507	Q8TCN5	953 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	RAD54L	Q92698	747 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891		F5H6K3	240 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	PPIP5K2	O43314	1243 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	PRKCSH	P14314	528 aa	Predicted RBP	18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	KRT9	P35527	623 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	KLRC3	Q07444	240 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	SLC15A2	Q16348	729 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	CNNM4	Q6P4Q7	775 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	P2RX7	Q99572	595 aa	Known RBP	18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	RAB34	Q9BZG1	259 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	SEMA6B	Q9H3T3	888 aa		18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	CGN	Q9P2M7	1197 aa	Known RBP	18.98	■□□□□ 0.63
PHGDH-229	ENST00000641891	NDUFB10	O96000	172 aa		18.97	■□□□□ 0.63
PHGDH-229	ENST00000641891	GH2	P01242	217 aa		18.97	■□□□□ 0.63
PHGDH-229	ENST00000641891	TRIM14	Q14142	442 aa		18.97	■□□□□ 0.63
PHGDH-229	ENST00000641891	CNOT6L	Q96LI5	555 aa	Known RBP	18.97	■□□□□ 0.63
PHGDH-229	ENST00000641891	TUBGCP2	Q9BSJ2	902 aa		18.97	■□□□□ 0.63
PHGDH-229	ENST00000641891	TTC26	A0AVF1	554 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	BICDL2	A1A5D9	508 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	MARCH6	O60337	910 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	NPM3	O75607	178 aa	Known RBP	18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	EN1	Q05925	392 aa	Predicted RBP	18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	NOC3L	Q8WTT2	800 aa	Known RBP	18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	SPDYE4	A6NLX3	237 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	KLK7	P49862	253 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	UNC13D	Q70J99	1090 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	CARD6	Q9BX69	1037 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	ANO3	Q9BYT9	981 aa		18.96	■□□□□ 0.63
PHGDH-229	ENST00000641891	ABL1	P00519	1130 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	IDE	P14735	1019 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	IK	Q13123	557 aa	Predicted RBP	18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	USH1G	Q495M9	461 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	FBXO38	Q6PIJ6	1188 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	TMTC1	Q8IUR5	882 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	GLIS3	Q8NEA6	775 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	DDX12P	Q92771	950 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	CSRNP1	Q96S65	589 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	CHP1	Q99653	195 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	ATRNL1	Q5VV63	1379 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	MEIS2	O14770	477 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	GCFC2	P16383	781 aa	Known RBP	18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	PCDHA12	Q9UN75	941 aa		18.95	■□□□□ 0.62
PHGDH-229	ENST00000641891	RGPD3	A6NKT7	1758 aa	Predicted RBP	18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	RGPD4	Q7Z3J3	1758 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891		A0A1W2PQC6	194 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891		A0A1W2PRG0	241 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	CLRN2	A0PK11	232 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	TCP10L2	B9ZVM9	353 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	ENTPD3	O75355	529 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	COBLL1	Q53SF7	1204 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	CYP26C1	Q6V0L0	522 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	SPICE1	Q8N0Z3	855 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	GMCL1P1	Q8NEA9	526 aa		18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	ZNF397	Q8NF99	534 aa	Predicted RBP	18.94	■□□□□ 0.62
PHGDH-229	ENST00000641891	PVALEF	A0A1B0GWK0	134 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	RASSF10	A6NK89	507 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	STAT3	P40763	770 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	MTIF2	P46199	727 aa	Known RBP	18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	MIIP	Q5JXC2	388 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	RBM26	Q5T8P6	1007 aa	Known RBP	18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	DNM2	P50570	870 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	MAP3K9	P80192	1104 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	CBX1	P83916	185 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	LRRC41	Q15345	812 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	SYDE2	Q5VT97	1194 aa		18.93	■□□□□ 0.62
PHGDH-229	ENST00000641891	CC2D2B	Q6DHV5	1058 aa		18.93	■□□□□ 0.62

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