RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ATP6V0A1Q93050 837 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ZMYND12Q9H0C1 365 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CNGB3Q9NQW8 809 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 DNAJC17Q9NVM6 304 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 AIPL1Q9NZN9 384 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF839A8K0R7 811 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CHRNA3P32297 505 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RGS2P41220 211 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 YWHAEP62258 255 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TSC22D1Q15714 1073 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 NSMCE1Q8WV22 266 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TEKT1Q969V4 418 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 GUCY2FP51841 1108 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 KBTBD3Q8NAB2 608 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 FUT8Q9BYC5 575 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 EXOC7Q9UPT5 735 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 C15orf41Q9Y2V0 281 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 COPG1Q9Y678 874 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 VCAM1P19320 739 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 FANCLQ9NW38 375 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 EHD2Q9NZN4 543 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PITPNM2Q9BZ72 1349 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 POTEFA5A3E0 1075 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 KRT8P05787 483 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 POTEIP0CG38 1075 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 GCLCP48506 637 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 NLRP6P59044 892 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ME3Q16798 604 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 POTEEQ6S8J3 1075 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 C1orf131Q8NDD1 294 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 APBB2Q92870 758 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ALKBH8Q96BT7 664 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 LTV1Q96GA3 475 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 EPB41L5Q9HCM4 733 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CD209Q9NNX6 404 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 FLT4P35916 1363 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PLCG2P16885 1265 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PDE4DQ08499 809 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 IQCB1Q15051 598 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TTC38Q5R3I4 469 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 IFIT1BQ5T764 474 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 IRGCQ6NXR0 463 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 DIS3L2Q8IYB7 885 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 EPSTI1Q96J88 318 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ETNK1Q9HBU6 452 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CABP1Q9NZU7 370 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PTPRKQ15262 1439 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 C16orf96A6NNT2 1141 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 H0YC42 278 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ACTN1P12814 892 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 MAP3K10Q02779 954 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 GRIN1Q05586 938 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 MAN2A1Q16706 1144 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 WASHC2DQ5SRD0 308 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CC2D2BQ6DHV5 1058 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TRMT10CQ7L0Y3 403 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PROM2Q8N271 834 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CLMNQ96JQ2 1002 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC134Q9H6E4 229 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 UBN1Q9NPG3 1134 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 AATFQ9NY61 560 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 NRBP1Q9UHY1 535 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PLAAQ9Y263 795 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 MAST1Q9Y2H9 1570 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 BIRC5O15392 142 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 KRT16P08779 473 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 GARSP41250 739 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 STX17P56962 302 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 SKOR1P84550 965 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 JADE3Q92613 823 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 XPO6Q96QU8 1125 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 DESI2Q9BSY9 194 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 DMAP1Q9NPF5 467 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ADCY9O60503 1353 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 PFASO15067 1338 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CMTM5Q96DZ9 223 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 NAF1Q96HR8 494 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 MMADHCQ9H3L0 296 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 VPS37BQ9H9H4 285 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TAB2Q9NYJ8 693 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 BTBD7Q9P203 1132 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 IQANK1A0A1B0GTG1 560 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 LRRC63Q05C16 580 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TSPYL6Q8N831 410 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 BHMTQ93088 406 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 FTOQ9C0B1 505 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ECT2Q9H8V3 914 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 IFT122Q9HBG6 1241 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 L1RE1Q9UN81 338 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 GPATCH8Q9UKJ3 1502 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 KIF11P52732 1056 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 DR1Q01658 176 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 KCTD16Q68DU8 428 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ATL2Q8NHH9 583 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 CYFIP2Q96F07 1278 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 KRT12Q99456 494 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 SYBUQ9NX95 663 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TRPC6Q9Y210 931 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ATP11BQ9Y2G3 1177 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms