RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CFHR5Q9BXR6 569 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 PCDHB6Q9Y5E3 794 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 CLIC4Q9Y696 253 aa23.45■■□□□ 1.34
CLN3-245ENST00000636172 NCLP19338 710 aaKnown RBP23.44■■□□□ 1.34
CLN3-245ENST00000636172 ARHGAP4P98171 946 aa23.44■■□□□ 1.34
CLN3-245ENST00000636172 CEBPZQ03701 1054 aaKnown RBP23.44■■□□□ 1.34
CLN3-245ENST00000636172 LETM2Q2VYF4 491 aa23.44■■□□□ 1.34
CLN3-245ENST00000636172 GPR142Q7Z601 462 aa23.44■■□□□ 1.34
CLN3-245ENST00000636172 RMDN3Q96TC7 470 aa23.44■■□□□ 1.34
CLN3-245ENST00000636172 EHMT1Q9H9B1 1298 aa23.44■■□□□ 1.34
CLN3-245ENST00000636172 TRPA1O75762 1119 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 TBC1D8O95759 1140 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 UBXN2AP68543 259 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 CNTN2Q02246 1040 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 ANO1Q5XXA6 986 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 PXMP2Q9NR77 195 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 POLR3EQ9NVU0 708 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 RTEL1Q9NZ71 1219 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 CFAP45Q9UL16 551 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 ASTN1O14525 1302 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 DNAJC25-GNG10A0A024R161 153 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 POTEB2H3BUK9 544 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 PGK2P07205 417 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 NASPP49321 788 aaPredicted RBP23.43■■□□□ 1.34
CLN3-245ENST00000636172 USP11P51784 963 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 SF3A1Q15459 793 aaKnown RBP23.43■■□□□ 1.34
CLN3-245ENST00000636172 PLEKHH3Q7Z736 793 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 ABRAQ8N0Z2 381 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 FAM133AQ8N9E0 248 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 IL31RAQ8NI17 732 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 GBP4Q96PP9 640 aa23.43■■□□□ 1.34
CLN3-245ENST00000636172 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.43■■□□□ 1.34
CLN3-245ENST00000636172 ZNF236Q9UL36 1845 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 STRNO43815 780 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 CYP3A4P08684 503 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 EIF2AK2P19525 551 aaKnown RBP23.42■■□□□ 1.34
CLN3-245ENST00000636172 ZNF174Q15697 407 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 GDPD2Q9HCC8 539 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 IVNS1ABPQ9Y6Y0 642 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 MGAMO43451 1857 aa23.42■■□□□ 1.34
CLN3-245ENST00000636172 FIBPO43427 364 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 CCNT1O60563 726 aaKnown RBP23.41■■□□□ 1.34
CLN3-245ENST00000636172 TDP2O95551 362 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 PTPREP23469 700 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 ADORA2AP29274 412 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 MCM7P33993 719 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 GRB14Q14449 540 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 PTPAQ15257 358 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 ARHGEF16Q5VV41 709 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 NSUN6Q8TEA1 469 aaKnown RBP23.41■■□□□ 1.34
CLN3-245ENST00000636172 PDCD2LQ9BRP1 358 aa23.41■■□□□ 1.34
CLN3-245ENST00000636172 SOWAHBA6NEL2 793 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 ECM2O94769 699 aaPredicted RBP23.4■■□□□ 1.34
CLN3-245ENST00000636172 PGM5Q15124 567 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 PPP4R3AQ6IN85 833 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 DNERQ8NFT8 737 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 LEO1Q8WVC0 666 aaPredicted RBP23.4■■□□□ 1.34
CLN3-245ENST00000636172 FGD4Q96M96 766 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 PLXNA1Q9UIW2 1896 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 ZSWIM8A7E2V4 1837 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 DOCK3Q8IZD9 2030 aa23.4■■□□□ 1.34
CLN3-245ENST00000636172 CYP3A7-CYP3A51PA0A087WV96 503 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 YEATS4O95619 227 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 CYP3A7P24462 503 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 PCNX4Q63HM2 1172 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 MOXD1Q6UVY6 613 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 LINC00301Q8NCQ3 95 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 SCAND2PQ9GZW5 306 aaPredicted RBP23.39■■□□□ 1.34
CLN3-245ENST00000636172 RCOR1Q9UKL0 485 aa23.39■■□□□ 1.34
CLN3-245ENST00000636172 SLC15A5A6NIM6 579 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 COBLO75128 1261 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 GCFC2P16383 781 aaKnown RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 CTGFP29279 349 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 CIITAP33076 1130 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 ALDH5A1P51649 535 aaPredicted RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 LACTBP83111 547 aaPredicted RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 SLC39A14Q15043 492 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 STK38Q15208 465 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 SPATA32Q96LK8 384 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 MBOAT7Q96N66 472 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 NAP1L4Q99733 375 aaKnown RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 SAGE1Q9NXZ1 904 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 ADD3Q9UEY8 706 aaKnown RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 LRRC37A2A6NM11 1700 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 FAM86B1E9PN63 330 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 SLC37A4O43826 429 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 FAM86B2P0C5J1 330 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 ORC2Q13416 577 aaPredicted RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 MORN1Q5T089 497 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 DDX25Q9UHL0 483 aaKnown RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 CEP131Q9UPN4 1083 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 MRVI1Q9Y6F6 885 aa23.38■■□□□ 1.33
CLN3-245ENST00000636172 DDX49Q9Y6V7 483 aaKnown RBP23.38■■□□□ 1.33
CLN3-245ENST00000636172 NEMFO60524 1076 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 BMP15O95972 392 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 NR3C2P08235 984 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 MRPS9P82933 396 aaKnown RBP23.37■■□□□ 1.33
CLN3-245ENST00000636172 ZNF792Q3KQV3 632 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 VSIG10LQ86VR7 867 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 C4orf32Q8N8J7 132 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms