RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	GRIA2	P42262	883 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	RAP1GAP	P47736	663 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	KCNJ6	P48051	423 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	SLC6A11	P48066	632 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	DLG4	P78352	724 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	SRSF3	P84103	164 aa	Known RBP	4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	CAP1	Q01518	475 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	LSAMP	Q13449	338 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	SF1	Q15637	639 aa	Known RBP	4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	INF2	Q27J81	1249 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	BICRAL	Q6AI39	1079 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	DENND5A	Q6IQ26	1287 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	ZC3H14	Q6PJT7	736 aa	Known RBP	4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	RPTN	Q6XPR3	784 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	CCDC103	Q8IW40	242 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	RCBTB1	Q8NDN9	531 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	OSBP2	Q969R2	916 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	IER2	Q9BTL4	223 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	LGR4	Q9BXB1	951 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	GCM1	Q9NP62	436 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	CD320	Q9NPF0	282 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	MBD1	Q9UIS9	605 aa	Predicted RBP	4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	GALK1	P51570	392 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	SSRP1	Q08945	709 aa	Known RBP	4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	TARBP2	Q15633	366 aa	Known RBP	4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	MBLAC2	Q68D91	279 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	TMEM132E	Q6IEE7	984 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	STYK1	Q6J9G0	422 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	SPATC1	Q76KD6	591 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	ANKLE2	Q86XL3	938 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	DCP2	Q8IU60	420 aa	Known RBP	4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	PPIL6	Q8IXY8	311 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	CPA5	Q8WXQ8	436 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	RNF38	Q9H0F5	515 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	OSBPL2	Q9H1P3	480 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	CNTD2	Q9H8S5	307 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	SNTG2	Q9NY99	539 aa		4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	TMEFF2	Q9UIK5	374 aa	Predicted RBP	4.67	□□□□□ -1.66
CNOT1-223	ENST00000628857	TCAF2	A6NFQ2	919 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857		F8W031	263 aa	Predicted RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	PRODH	O43272	600 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	NAT1	P18440	290 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	RANGAP1	P46060	587 aa	Predicted RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	CHRNA2	Q15822	529 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	PLEKHN1	Q494U1	663 aa	Predicted RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	WWC2	Q6AWC2	1192 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	CEP68	Q76N32	757 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	MAMDC2	Q7Z304	686 aa	Predicted RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	LDHD	Q86WU2	507 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	KRTAP19-1	Q8IUB9	90 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	CILP2	Q8IUL8	1156 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	THAP3	Q8WTV1	239 aa	Predicted RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	SEC14L1	Q92503	715 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	TMEM169	Q96HH4	297 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	IPO9	Q96P70	1041 aa	Known RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	SRPK1	Q96SB4	655 aa	Known RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	DHRS4	Q9BTZ2	278 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	PCDH18	Q9HCL0	1135 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	GULP1	Q9UBP9	304 aa		4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	SMG5	Q9UPR3	1016 aa	Known RBP	4.66	□□□□□ -1.66
CNOT1-223	ENST00000628857	FAM221B	A6H8Z2	402 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	NUDT19	A8MXV4	375 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	C22orf46	C9J442	243 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	IRS4	O14654	1257 aa	Predicted RBP	4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	FUCA1	P04066	466 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	C1QTNF9	P0C862	333 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	NCAM1	P13591	858 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	PFKL	P17858	780 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	FBLN1	P23142	703 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	GPR85	P60893	370 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	SUMO1	P63165	101 aa	Known RBP	4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	PRR5	P85299	388 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	CYP4F22	Q6NT55	531 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	ATG14	Q6ZNE5	492 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	AMIGO3	Q86WK7	504 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	SIAH1	Q8IUQ4	282 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	USP33	Q8TEY7	942 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	MZB1	Q8WU39	189 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	PTPRN2	Q92932	1015 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	KISS1R	Q969F8	398 aa	Predicted RBP	4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	TRMT2B	Q96GJ1	504 aa	Known RBP	4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	SIGLEC10	Q96LC7	697 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	TOX2	Q96NM4	488 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	AP5M1	Q9H0R1	490 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	CDIP1	Q9H305	208 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	MARCH2	Q9P0N8	246 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	RWDD3	Q9Y3V2	267 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	PCDHA5	Q9Y5H7	936 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	KDM2B	Q8NHM5	1336 aa		4.65	□□□□□ -1.67
CNOT1-223	ENST00000628857	TRBV23-1	A0A0A0MS06	115 aa		4.64	□□□□□ -1.67
CNOT1-223	ENST00000628857	KRTAP9-6	A0A140TA67	174 aa		4.64	□□□□□ -1.67
CNOT1-223	ENST00000628857	AQP7	O14520	342 aa		4.64	□□□□□ -1.67
CNOT1-223	ENST00000628857	WNT9A	O14904	365 aa		4.64	□□□□□ -1.67
CNOT1-223	ENST00000628857	KCNQ2	O43526	872 aa		4.64	□□□□□ -1.67
CNOT1-223	ENST00000628857	MAFK	O60675	156 aa		4.64	□□□□□ -1.67
CNOT1-223	ENST00000628857	IGFBP6	P24592	240 aa	Predicted RBP	4.64	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms