RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 NUP98P52948 1817 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 GMNCA6NCL1 334 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 RCCD1A6NED2 376 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 IFIT3O14879 490 aaKnown RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 SRGNP10124 158 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 CASP1P29466 404 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 SLC7A5Q01650 507 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 ATP2B2Q01814 1243 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 ICA1Q05084 483 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 ANKRD20A8PQ5CZ79 823 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 PRR5LQ6MZQ0 368 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 LRIG3Q6UXM1 1119 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 CCDC42Q96M95 316 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 TPX2Q9ULW0 747 aaKnown RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 TFR2Q9UP52 801 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 XDHP47989 1333 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 A0A1W2PQJ5 194 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 PES1O00541 588 aaKnown RBP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 NTSR2O95665 410 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 GHRP10912 638 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 GUCY1A2P33402 732 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 MATR3P43243 847 aaKnown RBP eCLIP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 SEC24CP53992 1094 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 ERFEQ4G0M1 354 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 FIGNQ5HY92 759 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 ZBTB38Q8NAP3 1195 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 MYL10Q9BUA6 226 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 SENP2Q9HC62 589 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 DNAJC8O75937 253 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 PDHBP11177 359 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 NAA25Q14CX7 972 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 CFAP221Q4G0U5 840 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 CACNA2D3Q8IZS8 1091 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 TMTC2Q8N394 836 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 CRACR2BQ8N4Y2 399 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 EIF1ADQ8N9N8 165 aaKnown RBP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 SGIP1Q9BQI5 828 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 MTA3Q9BTC8 594 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 IFIH1Q9BYX4 1025 aaKnown RBP11.97□□□□□ -0.49
UPF3A-212ENST00000619079 TTYH3Q9C0H2 523 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 EXOC1Q9NV70 894 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 KCNG1Q9UIX4 513 aa11.97□□□□□ -0.49
UPF3A-212ENST00000619079 UBE2Q2LH0YL09 131 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 MGRN1O60291 552 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 MAP2K1Q02750 393 aaPredicted RBP11.96□□□□□ -0.49
UPF3A-212ENST00000619079 GRIK3Q13003 919 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 LRRC24Q50LG9 513 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 CRELD2Q6UXH1 353 aaPredicted RBP11.96□□□□□ -0.49
UPF3A-212ENST00000619079 SYNE4Q8N205 404 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 ARMC2Q8NEN0 867 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 KRT23Q9C075 422 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 VPS54Q9P1Q0 977 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 LRWD1Q9UFC0 647 aa11.96□□□□□ -0.49
UPF3A-212ENST00000619079 IRS4O14654 1257 aaPredicted RBP11.96□□□□□ -0.5
UPF3A-212ENST00000619079 TRAPPC3O43617 180 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 RPN1P04843 607 aaKnown RBP11.96□□□□□ -0.5
UPF3A-212ENST00000619079 ADD2P35612 726 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 KRT2P35908 639 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 ZAP70P43403 619 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 PPARAQ07869 468 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 BIRC3Q13489 604 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 PPP2R5BQ15173 497 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 ALX1Q15699 326 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 FAM228AQ86W67 206 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 IRF2BP1Q8IU81 584 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 CCHCR1Q8TD31 782 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 HINFPQ9BQA5 517 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 SPATS2LQ9NUQ6 558 aaKnown RBP11.96□□□□□ -0.5
UPF3A-212ENST00000619079 HAUS2Q9NVX0 235 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 DENND2AQ9ULE3 1009 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 DUSP10Q9Y6W6 482 aa11.96□□□□□ -0.5
UPF3A-212ENST00000619079 MYH7P12883 1935 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 C5orf60A6NFR6 353 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 GCOM1H8Y6P7 765 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PSMA7O14818 248 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PCCAP05165 728 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 MYZAPP0CAP1 466 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 SCTRP47872 440 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 UBE3CQ15386 1083 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 GKAP1Q5VSY0 366 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 NAIF1Q69YI7 327 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PDXDC2PQ6P474 469 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 RUFY4Q6ZNE9 571 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 FAM114A1Q8IWE2 563 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 ADSSL1Q8N142 457 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 OXER1Q8TDS5 423 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 RNF26Q9BY78 433 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 OSBPL7Q9BZF2 842 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 KDM4CQ9H3R0 1056 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 SLC24A3Q9HC58 644 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PPANQ9NQ55 473 aaKnown RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 NFU1Q9UMS0 254 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 CAPN6Q9Y6Q1 641 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 ERICH2A1L162 156 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 COBLO75128 1261 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 HEXIM1O94992 359 aaKnown RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 HNRNPH3P31942 346 aaKnown RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 HSPA9P38646 679 aaKnown RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PRCPP42785 496 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms