RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 WTIPA6NIX2 430 aaPredicted RBP13.9□□□□□ -0.18
LIG1-221ENST00000613670 SRGNP10124 158 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 UHMK1Q8TAS1 419 aaKnown RBP13.9□□□□□ -0.18
LIG1-221ENST00000613670 EYA3Q99504 573 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 CAPN6Q9Y6Q1 641 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 C1orf167Q5SNV9 1468 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 MAP2K2P36507 400 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 GUCY1A3Q02108 690 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 UBE4AQ14139 1066 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 SEC23AQ15436 765 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 FAM133AQ8N9E0 248 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 LARP4BQ92615 738 aaKnown RBP13.9□□□□□ -0.18
LIG1-221ENST00000613670 VIPAS39Q9H9C1 493 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 ATP8A2Q9NTI2 1148 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 NF2P35240 595 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 RCAN1P53805 252 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 CORO7P57737 925 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 PDXDC2PQ6P474 469 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 SMIM5Q71RC9 77 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 CCDC65Q8IXS2 484 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 COA7Q96BR5 231 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 BRIP1Q9BX63 1249 aa13.9□□□□□ -0.18
LIG1-221ENST00000613670 CNTNAP5Q8WYK1 1306 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 BACH1O14867 736 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 CETN3O15182 167 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 PPP1R12BO60237 982 aaPredicted RBP13.89□□□□□ -0.19
LIG1-221ENST00000613670 PALMO75781 387 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 MYBL2P10244 700 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 SLC1A4P43007 532 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 MAP2K1Q02750 393 aaPredicted RBP13.89□□□□□ -0.19
LIG1-221ENST00000613670 MMS22LQ6ZRQ5 1243 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 DAAM2Q86T65 1068 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 CCDC25Q86WR0 208 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 AP1M1Q9BXS5 423 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 TACC3Q9Y6A5 838 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 POTEMA6NI47 508 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 NR1D1P20393 614 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 RBM5P52756 815 aaKnown RBP eCLIP13.89□□□□□ -0.19
LIG1-221ENST00000613670 PEX26Q7Z412 305 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 PACS2Q86VP3 889 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 LRRC47Q8N1G4 583 aaKnown RBP13.89□□□□□ -0.19
LIG1-221ENST00000613670 PIGSQ96S52 555 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 JPH2Q9BR39 696 aaPredicted RBP13.89□□□□□ -0.19
LIG1-221ENST00000613670 TRIM9Q9C026 710 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 ERVV-1B6SEH8 477 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 PDE2AO00408 941 aaPredicted RBP13.89□□□□□ -0.19
LIG1-221ENST00000613670 FAM26FQ5R3K3 315 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 EMBQ6PCB8 327 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 CCDC155Q8N6L0 562 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 ARL8AQ96BM9 186 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 MTA3Q9BTC8 594 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 SLAIN2Q9P270 581 aa13.89□□□□□ -0.19
LIG1-221ENST00000613670 TARSL2A2RTX5 802 aaKnown RBP13.88□□□□□ -0.19
LIG1-221ENST00000613670 SH3RF1Q7Z6J0 888 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 RBM12Q9NTZ6 932 aaKnown RBP13.88□□□□□ -0.19
LIG1-221ENST00000613670 TSKSQ9UJT2 592 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 KRIT1O00522 736 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 ABCB4P21439 1286 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 ADCY7P51828 1080 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 GSTO1P78417 241 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 EVX2Q03828 476 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 LRRC45Q96CN5 670 aa13.88□□□□□ -0.19
LIG1-221ENST00000613670 TBCAO75347 108 aaKnown RBP13.88□□□□□ -0.19
LIG1-221ENST00000613670 CELF1Q92879 486 aaKnown RBP13.88□□□□□ -0.19
LIG1-221ENST00000613670 REXO2Q9Y3B8 237 aaKnown RBP13.88□□□□□ -0.19
LIG1-221ENST00000613670 LOC102724428A0A0B4J2F2 783 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 RCCD1A6NED2 376 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 PCP11498 1178 aaKnown RBP13.87□□□□□ -0.19
LIG1-221ENST00000613670 GBP2P32456 591 aaPredicted RBP13.87□□□□□ -0.19
LIG1-221ENST00000613670 CARSP49589 748 aaKnown RBP13.87□□□□□ -0.19
LIG1-221ENST00000613670 SIK1P57059 783 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 PLS1Q14651 629 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 MSL1Q68DK7 614 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 PANK4Q9NVE7 773 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 TMEM260Q9NX78 707 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 FAM205AQ6ZU69 1335 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 VIMP08670 466 aaKnown RBP13.87□□□□□ -0.19
LIG1-221ENST00000613670 ALS2CLQ60I27 953 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 VGLL2Q8N8G2 317 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 PLCD4Q9BRC7 762 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 PCDHB13Q9Y5F0 798 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 UBR1Q8IWV7 1749 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 FGFR2P21802 821 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 SEC24CP53992 1094 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 ADAM9Q13443 819 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 GIMAP8Q8ND71 665 aaPredicted RBP13.87□□□□□ -0.19
LIG1-221ENST00000613670 DNAJC7Q99615 494 aa13.87□□□□□ -0.19
LIG1-221ENST00000613670 PDS5AQ29RF7 1337 aaKnown RBP13.87□□□□□ -0.19
LIG1-221ENST00000613670 A6NNZ2 444 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PBX1P40424 430 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 KCTD19Q17RG1 926 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 TUBB8Q3ZCM7 444 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 TPTE2Q6XPS3 522 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PNMA8AQ86V59 439 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 GPBP1Q86WP2 473 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 SPATA20Q8TB22 786 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 U2AF1L4Q8WU68 220 aaKnown RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 GPR101Q96P66 508 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 ANKRD2Q9GZV1 360 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 CUEDC2Q9H467 287 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms