RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 AK2P54819 239 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 FAAP100Q0VG06 881 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 IKQ13123 557 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-214ENST00000600840 RABEP1Q15276 862 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 SLC35G1Q2M3R5 365 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 TMEM67Q5HYA8 995 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 PPP4R3BQ5MIZ7 849 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 RNF180Q86T96 592 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 FAM160B2Q86V87 743 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 TMTC2Q8N394 836 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 TRERF1Q96PN7 1200 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 MAP3K14Q99558 947 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 UBAC1Q9BSL1 405 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 NKX2-4Q9H2Z4 354 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 ACAD9Q9H845 621 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 UPF2Q9HAU5 1272 aaKnown RBP10.19□□□□□ -0.78
TRIM28-214ENST00000600840 GPCPD1Q9NPB8 672 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 PDGFCQ9NRA1 345 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 PDRG1Q9NUG6 133 aa10.19□□□□□ -0.78
TRIM28-214ENST00000600840 PALM3A6NDB9 673 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 FAM86C2PA6NEL3 165 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 C6orf222P0C671 652 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 ACRP10323 421 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 PDHBP11177 359 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 PDIA3P30101 505 aaKnown RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 BEX3Q00994 111 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 WTAPQ15007 396 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 CCDC96Q2M329 555 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 TMEM240Q5SV17 173 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 IFIT1BQ5T764 474 aaKnown RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 APOA5Q6Q788 366 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 BTNL9Q6UXG8 535 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 PNMA1Q8ND90 353 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 KHSRPQ92945 711 aaKnown RBP eCLIP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 BRF1Q92994 677 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 ZNF274Q96GC6 653 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 TSEN34Q9BSV6 310 aaKnown RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 UPF3AQ9H1J1 476 aaKnown RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 RANBP17Q9H2T7 1088 aaKnown RBP10.18□□□□□ -0.78
TRIM28-214ENST00000600840 CPVLQ9H3G5 476 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 ABHD16BQ9H3Z7 469 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 FBXO40Q9UH90 709 aa10.18□□□□□ -0.78
TRIM28-214ENST00000600840 NID2Q14112 1375 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 NFIBO00712 420 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 ASGR1P07306 291 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 FDX1P10109 184 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 CSF2RAP15509 400 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 CDK7P50613 346 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 RCAN1P53805 252 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 GJA9P57773 515 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 APOBRQ0VD83 1088 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 FUT2Q10981 343 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 ST3GAL1Q11201 340 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 SART3Q15020 963 aaKnown RBP10.17□□□□□ -0.78
TRIM28-214ENST00000600840 RASIP1Q5U651 963 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 TAPT1Q6NXT6 567 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 EEPD1Q7L9B9 569 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 DCAF4Q8WV16 495 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 LARP6Q9BRS8 491 aaKnown RBP10.17□□□□□ -0.78
TRIM28-214ENST00000600840 ANP32EQ9BTT0 268 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 C11orf16Q9NQ32 467 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 STARD7Q9NQZ5 370 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 CYP39A1Q9NYL5 469 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 CXXC1Q9P0U4 656 aaPredicted RBP10.17□□□□□ -0.78
TRIM28-214ENST00000600840 MAD2L2Q9UI95 211 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 CCPG1Q9ULG6 757 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 TPCN1Q9ULQ1 816 aa10.17□□□□□ -0.78
TRIM28-214ENST00000600840 GNEQ9Y223 722 aaKnown RBP10.17□□□□□ -0.78
TRIM28-214ENST00000600840 YBX2Q9Y2T7 364 aaKnown RBP10.17□□□□□ -0.78
TRIM28-214ENST00000600840 ARIH1Q9Y4X5 557 aaPredicted RBP10.17□□□□□ -0.78
TRIM28-214ENST00000600840 GRIN2DO15399 1336 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 LARGE1O95461 756 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 TIMP1P01033 207 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ICAM1P05362 532 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 GOLGA8HP0CJ92 632 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 SMPD1P17405 629 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 CST5P28325 142 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-214ENST00000600840 CDC27P30260 824 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ANP32AP39687 249 aaKnown RBP10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ZNF543Q08ER8 600 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 BAATQ14032 418 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-214ENST00000600840 GRM4Q14833 912 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 NTRK3Q16288 839 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ME3Q16798 604 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 TKFCQ3LXA3 575 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 GNASQ5JWF2 1037 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 TMEM31Q5JXX7 168 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 SYDE2Q5VT97 1194 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 NSMFQ6X4W1 530 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ZNF365Q70YC5 407 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ANKRD33Q7Z3H0 272 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 FBXO16Q8IX29 292 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-214ENST00000600840 ZNF654Q8IZM8 581 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 STAG2Q8N3U4 1231 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 FANCBQ8NB91 859 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 CLEC4DQ8WXI8 215 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 MYL10Q9BUA6 226 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 PPP1R12CQ9BZL4 782 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 KAT14Q9H8E8 782 aa10.16□□□□□ -0.78
TRIM28-214ENST00000600840 TBX21Q9UL17 535 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms