RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	NUP133	Q8WUM0	1156 aa		10.18	□□□□□ -0.78
SSBP4-208	ENST00000600628	PDCD2L	Q9BRP1	358 aa		10.18	□□□□□ -0.78
SSBP4-208	ENST00000600628	PXMP2	Q9NR77	195 aa		10.18	□□□□□ -0.78
SSBP4-208	ENST00000600628	RBM28	Q9NW13	759 aa	Known RBP	10.18	□□□□□ -0.78
SSBP4-208	ENST00000600628	CDH23	Q9H251	3354 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628		A0A1W2PQ45	241 aa	Predicted RBP	10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628		A0A1W2PQY0	241 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	MOXD2P	A6NHM9	499 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	ZBTB43	O43298	467 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	SEC24B	O95487	1268 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	MYCN	P04198	464 aa	Predicted RBP	10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	PTGS1	P23219	599 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	CALML3	P27482	149 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	PSMA5	P28066	241 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	TNFAIP2	Q03169	654 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	TYW1B	Q6NUM6	668 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	BLOC1S2	Q6QNY1	142 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	CHRDL2	Q6WN34	429 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628		Q6ZUG5	572 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	ANKRD33	Q7Z3H0	272 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	RNF180	Q86T96	592 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	VSIG10L	Q86VR7	867 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	MICU3	Q86XE3	530 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	HOMER1	Q86YM7	354 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	CMTR1	Q8N1G2	835 aa	Known RBP	10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	EMID1	Q96A84	441 aa	Predicted RBP	10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	RRP36	Q96EU6	259 aa	Known RBP	10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	RMDN3	Q96TC7	470 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	CHD9	Q3L8U1	2897 aa		10.17	□□□□□ -0.78
SSBP4-208	ENST00000600628	GRIN2D	O15399	1336 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	ELP1	O95163	1332 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	KLF18	A0A0U1RQI7	1052 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628		A6NJR5	290 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	KBTBD13	C9JR72	458 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	NKRF	O15226	690 aa	Known RBP eCLIP	10.16	□□□□□ -0.78	1e-6	■■□□□ 14.2
SSBP4-208	ENST00000600628	ARIH2	O95376	493 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	CFB	P00751	764 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	NR3C2	P08235	984 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	HOXD8	P13378	290 aa	Predicted RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	CAST	P20810	708 aa	Known RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	PDIA3	P30101	505 aa	Known RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	ADD1	P35611	737 aa	Known RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	ACLY	P53396	1101 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	ATN1	P54259	1190 aa	Predicted RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	APOBR	Q0VD83	1088 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	KCNA10	Q16322	511 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	RTN1	Q16799	776 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	C8orf34	Q49A92	452 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	NFXL1	Q6ZNB6	911 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	TLK2	Q86UE8	772 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	IL31RA	Q8NI17	732 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	SCFD2	Q8WU76	684 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	BRF1	Q92994	677 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	ZNF274	Q96GC6	653 aa	Predicted RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	TOX2	Q96NM4	488 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	GDF15	Q99988	308 aa		10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	RBM27	Q9P2N5	1060 aa	Known RBP	10.16	□□□□□ -0.78
SSBP4-208	ENST00000600628	COL6A3	P12111	3177 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628		B4DLN1	442 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	hCG_1984214	I3L0E3	225 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	DHX16	O60231	1041 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	EIF3J	O75822	258 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	ASGR1	P07306	291 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	HOXA13	P31271	388 aa	Predicted RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	BMP8B	P34820	402 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	CLK2	P49760	499 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	MRPL12	P52815	198 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	RTP1	P59025	263 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	MRPS9	P82933	396 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	PDE4D	Q08499	809 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	PGM5	Q15124	567 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	STXBP2	Q15833	593 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	PKN1	Q16512	942 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	FSCN1	Q16658	493 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	EEPD1	Q7L9B9	569 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	RAB11FIP4	Q86YS3	637 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	ZNF713	Q8N859	430 aa	Predicted RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	PCSK9	Q8NBP7	692 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	CRYGN	Q8WXF5	182 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	INPP4A	Q96PE3	977 aa	Predicted RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	WDR11	Q9BZH6	1224 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	DDX41	Q9UJV9	622 aa	Known RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	CYP46A1	Q9Y6A2	500 aa		10.15	□□□□□ -0.78
SSBP4-208	ENST00000600628	DOCK5	Q9H7D0	1870 aa		10.15	□□□□□ -0.79
SSBP4-208	ENST00000600628	GOLGA8A	A7E2F4	631 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	GOLGA8B	A8MQT2	603 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	STXBP3	O00186	592 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	SLC34A2	O95436	690 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	POLR2M	P0CAP2	368 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	TGFB3	P10600	412 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	IFNAR1	P17181	557 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	SYN1	P17600	705 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	ICAM3	P32942	547 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	METAP2	P50579	478 aa	Known RBP eCLIP	10.14	□□□□□ -0.79	7e-7	■■■□□ 17.5
SSBP4-208	ENST00000600628	ARHGAP1	Q07960	439 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	WWC2	Q6AWC2	1192 aa		10.14	□□□□□ -0.79
SSBP4-208	ENST00000600628	PPP1R18	Q6NYC8	613 aa		10.14	□□□□□ -0.79

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