RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FOSL2P15408 326 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 CCL23P55773 120 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 SART3Q15020 963 aaKnown RBP11.41□□□□□ -0.58
VRK3-216ENST00000599342 STXBP2Q15833 593 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 ARHGEF16Q5VV41 709 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 SEPT14Q6ZU15 432 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 MAFAQ8NHW3 353 aaPredicted RBP11.41□□□□□ -0.58
VRK3-216ENST00000599342 SYTL5Q8TDW5 730 aaPredicted RBP11.41□□□□□ -0.58
VRK3-216ENST00000599342 MYLIPQ8WY64 445 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 TIFAQ96CG3 184 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 TAAR1Q96RJ0 339 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 IWS1Q96ST2 819 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 RMDN3Q96TC7 470 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 NOC4LQ9BVI4 516 aaKnown RBP11.41□□□□□ -0.58
VRK3-216ENST00000599342 AMNQ9BXJ7 453 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 JMJD4Q9H9V9 463 aa11.41□□□□□ -0.58
VRK3-216ENST00000599342 UMODL1Q5DID0 1318 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 A6NJR5 290 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 KLRF2D3W0D1 207 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 IFIT3O14879 490 aaKnown RBP11.4□□□□□ -0.58
VRK3-216ENST00000599342 CFBP00751 764 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 FGBP02675 491 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 CHMLP26374 656 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 SEC23AQ15436 765 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 CYB5R4Q7L1T6 521 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 C16orf59Q7L2K0 433 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.4□□□□□ -0.58
VRK3-216ENST00000599342 RPUSD2Q8IZ73 545 aaKnown RBP11.4□□□□□ -0.58
VRK3-216ENST00000599342 STAG2Q8N3U4 1231 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 NCOA7Q8NI08 942 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 HERVK_113Q902F9 699 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 TBC1D5Q92609 795 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 COPS5Q92905 334 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 TRMT13Q9NUP7 481 aaKnown RBP11.4□□□□□ -0.58
VRK3-216ENST00000599342 COL20A1Q9P218 1284 aa11.4□□□□□ -0.58
VRK3-216ENST00000599342 LAMA2P24043 3122 aaKnown RBP11.4□□□□□ -0.59
VRK3-216ENST00000599342 ZBTB5O15062 677 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 ARIH2O95376 493 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 GH1P01241 217 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 PFKMP08237 780 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 CYP21A2P08686 494 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 CYP2C9P11712 490 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 EIF2AK2P19525 551 aaKnown RBP11.39□□□□□ -0.59
VRK3-216ENST00000599342 CHMP4BP1P59074 171 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 PTH1RQ03431 593 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 TRAF1Q13077 416 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 WTAPQ15007 396 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 RAB30Q15771 203 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 NBPF20Q3BBV1 942 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 RASIP1Q5U651 963 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 NFRKBQ6P4R8 1299 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 OTOP2Q7RTS6 562 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 HOMER1Q86YM7 354 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 PBX4Q9BYU1 374 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 WNT8AQ9H1J5 351 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 ZNF576Q9H609 170 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 PXMP2Q9NR77 195 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 MAD2L2Q9UI95 211 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 MSRAQ9UJ68 235 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 NOD1Q9Y239 953 aa11.39□□□□□ -0.59
VRK3-216ENST00000599342 PALM3A6NDB9 673 aaPredicted RBP11.38□□□□□ -0.59
VRK3-216ENST00000599342 ZBBXA8MT70 800 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 E7EWF7 191 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 SGSM2O43147 1006 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 HSD17B4P51659 736 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 PTPN11Q06124 597 aaPredicted RBP11.38□□□□□ -0.59
VRK3-216ENST00000599342 GRM4Q14833 912 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 GRIN2CQ14957 1233 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 LY6KQ17RY6 165 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 CCDC62Q6P9F0 684 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 CHST3Q7LGC8 479 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 CATIPQ7Z7H3 387 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 AFG1LQ8WV93 481 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 MTMR8Q96EF0 704 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 SCLYQ96I15 445 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 MAP3K20Q9NYL2 800 aaKnown RBP11.38□□□□□ -0.59
VRK3-216ENST00000599342 PCDHA1Q9Y5I3 950 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 MRVI1Q9Y6F6 885 aa11.38□□□□□ -0.59
VRK3-216ENST00000599342 GRXCR1A8MXD5 290 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 EIF3JO75822 258 aaKnown RBP11.37□□□□□ -0.59
VRK3-216ENST00000599342 NR3C2P08235 984 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 MMP3P08254 477 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 MYCLP12524 364 aaPredicted RBP11.37□□□□□ -0.59
VRK3-216ENST00000599342 CASTP20810 708 aaKnown RBP11.37□□□□□ -0.59
VRK3-216ENST00000599342 PBX2P40425 430 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 BFSP2Q13515 415 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 DGKDQ16760 1214 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 TMEM67Q5HYA8 995 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 SAMD3Q8N6K7 520 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 RETREG2Q8NC44 543 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 GAS2L1Q99501 681 aaPredicted RBP11.37□□□□□ -0.59
VRK3-216ENST00000599342 CXXC1Q9P0U4 656 aaPredicted RBP11.37□□□□□ -0.59
VRK3-216ENST00000599342 SLC4A7Q9Y6M7 1214 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 MYH6P13533 1939 aa11.37□□□□□ -0.59
VRK3-216ENST00000599342 GCOM1H8Y6P7 765 aaPredicted RBP11.36□□□□□ -0.59
VRK3-216ENST00000599342 PITPNM1O00562 1244 aa11.36□□□□□ -0.59
VRK3-216ENST00000599342 OPLAHO14841 1288 aa11.36□□□□□ -0.59
VRK3-216ENST00000599342 PPP1R11O60927 126 aaPredicted RBP11.36□□□□□ -0.59
VRK3-216ENST00000599342 POLR2MP0CAP2 368 aa11.36□□□□□ -0.59
VRK3-216ENST00000599342 ACTN1P12814 892 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms