RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SPTLC3Q9NUV7 552 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 INTS13Q9NVM9 706 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 POTEMA6NI47 508 aa19.19■□□□□ 0.66
SHKBP1-216ENST00000598201 KIF3CO14782 793 aa19.19■□□□□ 0.66
SHKBP1-216ENST00000598201 STAT2P52630 851 aa19.19■□□□□ 0.66
SHKBP1-216ENST00000598201 GGA3Q9NZ52 723 aa19.19■□□□□ 0.66
SHKBP1-216ENST00000598201 LRWD1Q9UFC0 647 aa19.19■□□□□ 0.66
SHKBP1-216ENST00000598201 PHF20L1A8MW92 1017 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 KLRC4O43908 158 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 COBLO75128 1261 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 PTPN21Q16825 1174 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 VCPKMTQ9H867 229 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 IMPACTQ9P2X3 320 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 GDAQ9Y2T3 454 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 SYNRGQ9UMZ2 1314 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 GRB10Q13322 594 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 ZNF658Q5TYW1 1059 aaPredicted RBP19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 SPATA1Q5VX52 437 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 LDHDQ86WU2 507 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 DCPSQ96C86 337 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 NUDT12Q9BQG2 462 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 CTNND2Q9UQB3 1225 aa19.18■□□□□ 0.66
SHKBP1-216ENST00000598201 CBFA2T2O43439 604 aa19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 GCFC2P16383 781 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 CRYGNQ8WXF5 182 aa19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 PNMA5Q96PV4 448 aa19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 UIMC1Q96RL1 719 aa19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 CUEDC2Q9H467 287 aa19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 RMND1Q9NWS8 449 aa19.17■□□□□ 0.66
SHKBP1-216ENST00000598201 PDIA5Q14554 519 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 TMEM266Q2M3C6 531 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 KMT5BQ4FZB7 885 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 SMCHD1A6NHR9 2005 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 ASNSP08243 561 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 CDK11BP21127 795 aaKnown RBP19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 USP11P51784 963 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 CCZ1BP86790 482 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 CCZ1P86791 482 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 AP3B2Q13367 1082 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 ARMCX5Q6P1M9 558 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 CALML4Q96GE6 196 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 MAPK8IP1Q9UQF2 711 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 PITPNM2Q9BZ72 1349 aa19.16■□□□□ 0.66
SHKBP1-216ENST00000598201 MYL1P05976 194 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 HOXA13P31271 388 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 PRCPP42785 496 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 GSDMDP57764 484 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 VSTM4Q8IW00 320 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 KIFC2Q96AC6 838 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 MAGEF1Q9HAY2 307 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 BLOC1S4Q9NUP1 217 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 CYP3A7-CYP3A51PA0A087WV96 503 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 CYP3A7P24462 503 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 ARHGAP4P98171 946 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 KCNB1Q14721 858 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 CDKAL1Q5VV42 579 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 MAP1SQ66K74 1059 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 CCDC174Q6PII3 467 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 APTXQ7Z2E3 356 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 APOBEC3FQ8IUX4 373 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 MBOAT7Q96N66 472 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 TRIM9Q9C026 710 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 FBXO28Q9NVF7 368 aa19.15■□□□□ 0.66
SHKBP1-216ENST00000598201 TNFAIP1Q13829 316 aa19.14■□□□□ 0.65
SHKBP1-216ENST00000598201 DHX8Q14562 1220 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-216ENST00000598201 SULF1Q8IWU6 871 aa19.14■□□□□ 0.65
SHKBP1-216ENST00000598201 RAB34Q9BZG1 259 aa19.14■□□□□ 0.65
SHKBP1-216ENST00000598201 KCNMB3Q9NPA1 279 aa19.14■□□□□ 0.65
SHKBP1-216ENST00000598201 RHOBTB3O94955 611 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 SKILP12757 684 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 PAK1Q13153 545 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 ECM1Q16610 540 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 KRT26Q7Z3Y9 468 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 SNX29Q8TEQ0 813 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 CHURC1Q8WUH1 139 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 NELFBQ8WX92 580 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 NAP1L4Q99733 375 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 C7orf25Q9BPX7 421 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 ZNF341Q9BYN7 854 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 RANBP17Q9H2T7 1088 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 SH2D4AQ9H788 454 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 RWDD2AQ9UIY3 292 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 PCDHA12Q9UN75 941 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 CHADLQ6NUI6 762 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 SAMD1Q6SPF0 538 aaPredicted RBP19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 KCNK18Q7Z418 384 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 ADSSL1Q8N142 457 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 TBC1D5Q92609 795 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 DEFB129Q9H1M3 183 aa19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 POLR2AP24928 1970 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-216ENST00000598201 SPDYE3A6NKU9 549 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 MARCH6O60337 910 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 TOMM70O94826 608 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 SREBF1P36956 1147 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 MCM6Q14566 821 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 KRT79Q5XKE5 535 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 PLA2G6O60733 806 aa19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 FOSP01100 380 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-216ENST00000598201 TMEM119Q4V9L6 283 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms