RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 LY9Q9HBG7 655 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 MAP3K20Q9NYL2 800 aaKnown RBP17.51■□□□□ 0.39
LIG1-215ENST00000597901 TBX21Q9UL17 535 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 LAMA4Q16363 1823 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 PNMA6FA0A0J9YX94 578 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 TLR3O15455 904 aaKnown RBP17.5■□□□□ 0.39
LIG1-215ENST00000597901 CD4P01730 458 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 HSD17B4P51659 736 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 EPHB4P54760 987 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 GHRHRQ02643 423 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 TRAF1Q13077 416 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 COL9A3Q14050 684 aaPredicted RBP17.5■□□□□ 0.39
LIG1-215ENST00000597901 PPP2R5BQ15173 497 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 ARHGEF16Q5VV41 709 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 CCDC62Q6P9F0 684 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 COPS5Q92905 334 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 TMEM87BQ96K49 555 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 MAP3K14Q99558 947 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 SEZ6LQ9BYH1 1024 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 POLR3EQ9NVU0 708 aa17.5■□□□□ 0.39
LIG1-215ENST00000597901 NR3C2P08235 984 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 MYL3P08590 195 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 CPT1AP50416 773 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 PSMC6P62333 389 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 FPGSQ05932 587 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 TTLL4Q14679 1199 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 MFSD5Q6N075 450 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 SEPT14Q6ZU15 432 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 ZNF654Q8IZM8 581 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 SAMD3Q8N6K7 520 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 CCDC136Q96JN2 1154 aa17.49■□□□□ 0.39
LIG1-215ENST00000597901 MCM3APO60318 1980 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 DNAH12Q6ZR08 3092 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 A6NJR5 290 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 EIF3JO75822 258 aaKnown RBP17.48■□□□□ 0.39
LIG1-215ENST00000597901 ARIH2O95376 493 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 EIF2AK2P19525 551 aaKnown RBP17.48■□□□□ 0.39
LIG1-215ENST00000597901 BRDTQ58F21 947 aaPredicted RBP17.48■□□□□ 0.39
LIG1-215ENST00000597901 NFXL1Q6ZNB6 911 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 MYL10Q9BUA6 226 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 TRPV6Q9H1D0 765 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 PXMP2Q9NR77 195 aa17.48■□□□□ 0.39
LIG1-215ENST00000597901 CCDC69A6NI79 296 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 GCOM1H8Y6P7 765 aaPredicted RBP17.47■□□□□ 0.39
LIG1-215ENST00000597901 SH2B2O14492 632 aaPredicted RBP17.47■□□□□ 0.39
LIG1-215ENST00000597901 KPNA6O60684 536 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 DDAH1O94760 285 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 POLR2MP0CAP2 368 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 SMARCA1P28370 1054 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 HOXA13P31271 388 aaPredicted RBP17.47■□□□□ 0.39
LIG1-215ENST00000597901 KIF5BP33176 963 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 LIFRP42702 1097 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 PURAQ00577 322 aaKnown RBP17.47■□□□□ 0.39
LIG1-215ENST00000597901 LY6KQ17RY6 165 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 Q7L0L9 218 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 CTCFLQ8NI51 663 aaPredicted RBP17.47■□□□□ 0.39
LIG1-215ENST00000597901 PIBF1Q8WXW3 757 aa17.47■□□□□ 0.39
LIG1-215ENST00000597901 MTG1Q9BT17 334 aaPredicted RBP17.47■□□□□ 0.39
LIG1-215ENST00000597901 CDC45O75419 566 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 RNF20Q5VTR2 975 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 C16orf59Q7L2K0 433 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 VSIG10LQ86VR7 867 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 SLC17A8Q8NDX2 589 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 LZTS2Q9BRK4 669 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 PDCD2LQ9BRP1 358 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 PPP1R12CQ9BZL4 782 aa17.46■□□□□ 0.39
LIG1-215ENST00000597901 DDX41Q9UJV9 622 aaKnown RBP17.46■□□□□ 0.39
LIG1-215ENST00000597901 B4GALT4O60513 344 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 GH1P01241 217 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 MYCLP12524 364 aaPredicted RBP17.45■□□□□ 0.38
LIG1-215ENST00000597901 CYP2C18P33260 490 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 GNAQP50148 359 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 TSGA10IPQ3SY00 556 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 FCHSD1Q86WN1 690 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 TMEM199Q8N511 208 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 SRBD1Q8N5C6 995 aaKnown RBP17.45■□□□□ 0.38
LIG1-215ENST00000597901 AFG1LQ8WV93 481 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 NEK1Q96PY6 1258 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 SPZ1Q9BXG8 430 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 LRRC2Q9BYS8 371 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 ALDH8A1Q9H2A2 487 aaPredicted RBP17.45■□□□□ 0.38
LIG1-215ENST00000597901 MTMR10Q9NXD2 777 aa17.45■□□□□ 0.38
LIG1-215ENST00000597901 CALM1P0DP23 149 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 CALM2P0DP24 149 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 CALM3P0DP25 149 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 CSF2RAP15509 400 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 EXOSC10Q01780 885 aaKnown RBP17.44■□□□□ 0.38
LIG1-215ENST00000597901 ARHGAP1Q07960 439 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 PPIGQ13427 754 aaKnown RBP eCLIP17.44■□□□□ 0.382e-7■■■□□ 15.7
LIG1-215ENST00000597901 NBPF20Q3BBV1 942 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 FAM109BQ6ICB4 259 aaPredicted RBP17.44■□□□□ 0.38
LIG1-215ENST00000597901 RASEFQ8IZ41 740 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 CMTR1Q8N1G2 835 aaKnown RBP17.44■□□□□ 0.38
LIG1-215ENST00000597901 FANCBQ8NB91 859 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 RRP36Q96EU6 259 aaKnown RBP17.44■□□□□ 0.38
LIG1-215ENST00000597901 SLC12A7Q9Y666 1083 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 LCTP09848 1927 aa17.44■□□□□ 0.38
LIG1-215ENST00000597901 RGS20O76081 388 aa17.43■□□□□ 0.38
LIG1-215ENST00000597901 PLEKHA8P1O95397 391 aa17.43■□□□□ 0.38
LIG1-215ENST00000597901 RXRAP19793 462 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms