RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PIGSQ96S52 555 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 MYL10Q9BUA6 226 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 PPP1R12CQ9BZL4 782 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 WNT8AQ9H1J5 351 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 BCAS3Q9H6U6 928 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 RIOX1Q9H6W3 641 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 CNNM2Q9H8M5 875 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 SPTBN5Q9NRC6 3674 aaKnown RBP12.24□□□□□ -0.45
LIG1-213ENST00000596672 Q9Y3F1 56 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 U3KPZ7 1027 aaPredicted RBP12.24□□□□□ -0.45
LIG1-213ENST00000596672 DOCK5Q9H7D0 1870 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 ABCB11O95342 1321 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 GRXCR1A8MXD5 290 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 DCDC2CA8MYV0 355 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 B4GALT4O60513 344 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 ACRP10323 421 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 HSD17B4P51659 736 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 LY6KQ17RY6 165 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 TMEM240Q5SV17 173 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 MFSD5Q6N075 450 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 FBXO11Q86XK2 927 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 DNERQ8NFT8 737 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 GPKOWQ92917 476 aaPredicted RBP eCLIP12.23□□□□□ -0.45
LIG1-213ENST00000596672 VTI1AQ96AJ9 217 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 ESYT1Q9BSJ8 1104 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 UBAC1Q9BSL1 405 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 NOC4LQ9BVI4 516 aaKnown RBP12.23□□□□□ -0.45
LIG1-213ENST00000596672 AP5M1Q9H0R1 490 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 LY9Q9HBG7 655 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 TRMT13Q9NUP7 481 aaKnown RBP12.23□□□□□ -0.45
LIG1-213ENST00000596672 ADD3Q9UEY8 706 aaKnown RBP12.23□□□□□ -0.45
LIG1-213ENST00000596672 TELO2Q9Y4R8 837 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 TRANK1O15050 2925 aa12.23□□□□□ -0.45
LIG1-213ENST00000596672 LOC102724159A0A0B4J2E5 919 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 A6NJR5 290 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 IFIT3O14879 490 aaKnown RBP12.22□□□□□ -0.45
LIG1-213ENST00000596672 SLC27A2O14975 620 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 EIF2AK2P19525 551 aaKnown RBP12.22□□□□□ -0.45
LIG1-213ENST00000596672 HOXA13P31271 388 aaPredicted RBP12.22□□□□□ -0.45
LIG1-213ENST00000596672 NT5C2P49902 561 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 FPGSQ05932 587 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 ARHGAP1Q07960 439 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 PDE4DQ08499 809 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 NECTIN1Q15223 517 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 PWP2Q15269 919 aaKnown RBP12.22□□□□□ -0.45
LIG1-213ENST00000596672 KAT2BQ92831 832 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 SPC25Q9HBM1 224 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 CXXC1Q9P0U4 656 aaPredicted RBP12.22□□□□□ -0.45
LIG1-213ENST00000596672 NCOR1O75376 2440 aa12.22□□□□□ -0.45
LIG1-213ENST00000596672 ZBTB5O15062 677 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 TXNP10599 105 aaKnown RBP12.21□□□□□ -0.45
LIG1-213ENST00000596672 CYP2C9P11712 490 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 PBX2P40425 430 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 SP2Q02086 613 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 HIC1Q14526 733 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 NBPF20Q3BBV1 942 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 ZNF365Q70YC5 407 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 RAB11FIP4Q86YS3 637 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 RASEFQ8IZ41 740 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 OR6J1Q8NGC5 347 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 RUFY2Q8WXA3 655 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 RMDN3Q96TC7 470 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 LRRC2Q9BYS8 371 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 ALDH8A1Q9H2A2 487 aaPredicted RBP12.21□□□□□ -0.45
LIG1-213ENST00000596672 SEMA6BQ9H3T3 888 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 PXMP2Q9NR77 195 aa12.21□□□□□ -0.45
LIG1-213ENST00000596672 PTPRSQ13332 1948 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 DHX16O60231 1041 aaKnown RBP12.2□□□□□ -0.46
LIG1-213ENST00000596672 PLEKHA8P1O95397 391 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 CFBP00751 764 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 NR3C2P08235 984 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 MYL3P08590 195 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 RXRAP19793 462 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 CCL23P55773 120 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 GPNMBQ14956 572 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 TMEM67Q5HYA8 995 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 CREB3L3Q68CJ9 461 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 SEPT14Q6ZU15 432 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 HOMER1Q86YM7 354 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 CMTR1Q8N1G2 835 aaKnown RBP12.2□□□□□ -0.46
LIG1-213ENST00000596672 NCOA7Q8NI08 942 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 SCFD2Q8WU76 684 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 AFG1LQ8WV93 481 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 PIBF1Q8WXW3 757 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 SCLYQ96I15 445 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 RNPC3Q96LT9 517 aaKnown RBP12.2□□□□□ -0.46
LIG1-213ENST00000596672 PDCD2LQ9BRP1 358 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 AMNQ9BXJ7 453 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 DDX41Q9UJV9 622 aaKnown RBP12.2□□□□□ -0.46
LIG1-213ENST00000596672 STXBP5LQ9Y2K9 1186 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 PCDHA1Q9Y5I3 950 aa12.2□□□□□ -0.46
LIG1-213ENST00000596672 SH2B2O14492 632 aaPredicted RBP12.19□□□□□ -0.46
LIG1-213ENST00000596672 PRC1O43663 620 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 SORBS3O60504 671 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 CABYRO75952 493 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 SMAD3P84022 425 aaKnown RBP12.19□□□□□ -0.46
LIG1-213ENST00000596672 SEMA3FQ13275 785 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 WTAPQ15007 396 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 PPP2R5BQ15173 497 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 VSIG10LQ86VR7 867 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms